getExCounts: Obtain Exonic Feature Counts
In JMF47/recountNNLS: Transcript abundance linear modeling from compressed coverage information
Description
Usage
Arguments
Value
Description
This function returns the coverage of the exonic portion of sufficient
features identified based on sequencing read length. It takes as input
a pheno table of all the same rls and queries the bigwig_path.
Usage
1
getExCounts(pheno, cores = 1)
Arguments
pheno
The phenotype matrix created by processPheno(), limited to 1 'rls' group.
cores
The number of processing cores to use.
Value
A matrix containing the exonic feature counts for the samples in pheno.
JMF47/recountNNLS documentation built on May 28, 2019, 12:42 p.m.
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Description Usage Arguments Value
Description
This function returns the coverage of the exonic portion of sufficient features identified based on sequencing read length. It takes as input a pheno table of all the same rls and queries the bigwig_path.
Usage
1 | getExCounts(pheno, cores = 1)
|
Arguments
pheno |
The phenotype matrix created by processPheno(), limited to 1 'rls' group. |
cores |
The number of processing cores to use. |
Value
A matrix containing the exonic feature counts for the samples in pheno.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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