processPheno: Phenotype Information Creation
In JMF47/recountNNLS: Transcript abundance linear modeling from compressed coverage information
Description
Usage
Arguments
Value
Examples
Description
This function creates a phenotype/meta-information matrix with the information needed
for the rest of the analysis. The supplied input is either an SRA
project id (from a project compiled on recount2), or a manifest file
that contains information where the Rail-RNA outputs are.
Usage
1
processPheno(input, local = FALSE)
Arguments
input
The project name from SRA as a character
OR a data.frame describing another project aligned with Rail-RNA.
Value
A phenotype matrix containing at least the necessary information to run recountNNLS.
Examples
1
2
project = 'SRP063581'
pheno = processPheno(project)
JMF47/recountNNLS documentation built on May 28, 2019, 12:42 p.m.
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Description Usage Arguments Value Examples
Description
This function creates a phenotype/meta-information matrix with the information needed for the rest of the analysis. The supplied input is either an SRA project id (from a project compiled on recount2), or a manifest file that contains information where the Rail-RNA outputs are.
Usage
1 | processPheno(input, local = FALSE)
|
Arguments
input |
The project name from SRA as a |
Value
A phenotype matrix containing at least the necessary information to run recountNNLS.
Examples
1 2 | project = 'SRP063581'
pheno = processPheno(project)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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