processReadLength: NNLS for Tx Abundance Calculation

In JMF47/recountNNLS: Transcript abundance linear modeling from compressed coverage information

Description

This function applies runs our NNLS model for a given subset of the pheno matrix that has the same read length specified and reports an rse.

Usage

processReadLength(rl, pheno, jx_file, cores, counts = NULL)

Arguments

rl	A read length that exists in the pheno table
pheno	The phenotype matrix created by processPheno().
jx_file	The path to the Rail-RNA junction coverage file if processing sample not already in recount2.
cores	The number of processing cores to use.

Value

A rse of the quantified tx abundances in the samples in pheno.

JMF47/recountNNLS documentation built on May 28, 2019, 12:42 p.m.