tximeta: Transcript Quantification Import with Automatic Metadata

Transcript quantification import from Salmon with automatic population of metadata and transcript ranges. Filtered, combined, or de novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for reproducible analyses.

Package details

AuthorMichael Love [aut, cre], Rob Patro [aut, ctb], Peter Hickey [aut, ctb], Charlotte Soneson [aut, ctb]
Bioconductor views Annotation DataImport GeneExpression ImmunoOncology Preprocessing RNASeq Transcription Transcriptomics
MaintainerMichael Love <[email protected]>
LicenseGPL-2
Version1.0.3
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("tximeta")

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tximeta documentation built on Jan. 12, 2019, 6:01 p.m.