tximeta: Transcript Quantification Import with Automatic Metadata

Transcript quantification import from Salmon and alevin with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.

Package details

AuthorMichael Love [aut, cre], Charlotte Soneson [aut, ctb], Peter Hickey [aut, ctb], Rob Patro [aut, ctb]
Bioconductor views Annotation DataImport FunctionalGenomics GeneExpression GenomeAnnotation ImmunoOncology Preprocessing RNASeq ReportWriting ReproducibleResearch SingleCell Transcription Transcriptomics
MaintainerMichael Love <michaelisaiahlove@gmail.com>
URL https://github.com/mikelove/tximeta
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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tximeta documentation built on April 13, 2021, 6:01 p.m.