retrieveCDNA: Retrieve the cDNA transcript sequence for a...
In tximeta: Transcript Quantification Import with Automatic Metadata
Description
Usage
Arguments
Value
Examples
Description
This helper function retrieves the cDNA sequence of
the transcripts used for expression quantification.
This function either downloads or loads the transcript
sequence from cache, it does not re-order or check against
the rows of the SummarizedExperiment (which could be
already summarized to genes for example).
Usage
1
retrieveCDNA(se, quiet = FALSE)
Arguments
se
the SummarizedExperiment
quiet
logical, suppress messages
Value
a DNAStringSet object
Examples
1
2
example(tximeta)
cdna <- retrieveCDNA(se)
tximeta documentation built on April 13, 2021, 6:01 p.m.
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Description Usage Arguments Value Examples
Description
This helper function retrieves the cDNA sequence of the transcripts used for expression quantification. This function either downloads or loads the transcript sequence from cache, it does not re-order or check against the rows of the SummarizedExperiment (which could be already summarized to genes for example).
Usage
1 | retrieveCDNA(se, quiet = FALSE)
|
Arguments
se |
the SummarizedExperiment |
quiet |
logical, suppress messages |
Value
a DNAStringSet object
Examples
1 2 | example(tximeta)
cdna <- retrieveCDNA(se)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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