Biocview "ReportWriting"

A "corrective make-up" program for microarray chips
Affymetrix expression data quality control and reproducibility analysis
Affymetrix Quality Assessment and Analysis Tool
A Framework for Quality Control
A Framework for Quality Control
A generic R plugin dispatcher for BASE
Analysis of amplicon enrichment panels
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Large Affymetrix Microarray Data Sets
Analysis of single-cell epigenomics datasets with a Shiny App
Analysis of single-cell epigenomics datasets with a Shiny App
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
Annotation tools for Affymetrix biological metadata
An package for identification of novel peptides by customized database derived from RNA-Seq
An package for identification of novel peptides by customized database derived from RNA-Seq
An package for identification of novel peptides by customized database derived from RNA-Seq
An R package for proteomics data quality control
An R package for proteomics data quality control
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
A package for importing and analyzing data from Roche's Genome Sequencer System
A package for variant peptides detection and visualization in shotgun proteomics.
A pipeline for processing drug sensitivity screen data
Automate package and project setup for Bioconductor packages
Automate package and project setup for Bioconductor packages
Build IGV tracks and HTML reports
Compare Characteristic Features of Count Data Sets
Compare Characteristic Features of Count Data Sets
Condition specific detection from expression data
Data Package for the annoFuse Bioconductor Package
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
Dynamic document tools
Dynamic document tools
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
Export plotting files to the xmapBridge for visualisation in X:Map
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
geneChip Analysis Package
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
Helps creating report for improving Reproducible computational Research
Helps creating report for improving Reproducible Computational Research
High-Throughput Sequence Analysis using the Aroma Framework
Interactive Differential Expression AnaLysis
Interactive Differential Expression AnaLysis
Interactive Differential Expression AnaLysis
Interactive HTML graphics
Interactive HTML graphics
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
Load FastqQC reports and other NGS related files
Load FastqQC reports and other NGS related files
Load FastqQC reports and other NGS related files
Murine Palate miRNA Expression Analysis
Provides shiny modules to visualize sparrow results
Quality metrics and data processing methods for NanoString mRNA gene expression data
Quality metrics for ChIPseq data
Quality metrics for ChIPseq data
Quality metrics for ChIPseq data
Quality metrics report for microarray data sets
Quality metrics report for microarray data sets
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
Report of DEG analysis
Report of DEG analysis
Reproducible GSEA Benchmarking
Reproducible GSEA Benchmarking
Re-using Content in Bioconductor Books
Re-using Content in Bioconductor Books
Rmarkdown templates for bioinformatic analysis
rnaSeq secondary analyses
RNA-Seq Utilities
RNA-Seq Utilities
Seamless navigation through combined results of set-based and network-based enrichment analysis
Seamless navigation through combined results of set-based and network-based enrichment analysis
Shiny App for loading multiple FastQC reports
Single-Cell RNA-Seq Utilities
Single-Cell RNA-Seq Utilities
small RNA-Seq Utilities
spsBio: A systemPipeShiny plugin for biological data visualization
systemPipeR: NGS workflow and report generation environment
systemPipeR: workflow management and report generation environment
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization
The scigenex package (Single-Cell Informative GENe Explorer)
The scigenex package (Single-Cell Informative GENe Explorer)
Tool for Evaluation of Cell Identity from Transcription Profiles
Tool for Evaluation of Cell Identity from Transcription Profiles
Tools for data visualization
Tools to aid the development of Bioconductor Workflow packages
Tools to aid the development of Bioconductor Workflow packages
Transcript Quantification Import with Automatic Metadata
Transcript Quantification Import with Automatic Metadata
User-friendly Workflow for Pre-processing and Statistical Analysis of Mass Spectrometry Data
Very simple high level analysis of Affymetrix data