tracktables: Build IGV tracks and HTML reports
Version 1.10.0

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

AuthorTom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang
Bioconductor views ReportWriting Sequencing
Date of publicationNone
MaintainerTom Carroll <tc.infomatics@gmail.com>
LicenseGPL (>= 3)
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("tracktables")

Popular man pages

igvParam: Parameters for displaying bigwigs, bams and intervals in IGV
Intervals: Example genomic intervals
makebedtable: Make HTML pages for interval files or GRanges.
MakeIGVSampleMetadata: Make sample metadata file for use with IGV.
MakeIGVSession: Make IGV session XML and sample information file
MakeIGVSessionXML: Make IGV session XML
maketracktable: Make HTML pages for IGV sessions (Tracktables Experiment...
See all...

All man pages Function index File listing

Man pages

igvParam: Parameters for displaying bigwigs, bams and intervals in IGV
Intervals: Example genomic intervals
makebedtable: Make HTML pages for interval files or GRanges.
MakeIGVSampleMetadata: Make sample metadata file for use with IGV.
MakeIGVSession: Make IGV session XML and sample information file
MakeIGVSessionXML: Make IGV session XML
maketracktable: Make HTML pages for IGV sessions (Tracktables Experiment...

Functions

Files

DESCRIPTION
NAMESPACE
R
R/tracktablesFunctions.R
build
build/vignette.rds
data
data/Intervals.rda
inst
inst/NEWS.Rd
inst/doc
inst/doc/tracktables.R
inst/doc/tracktables.Rnw
inst/doc/tracktables.pdf
inst/extdata
inst/extdata/EBF_Example.bw
inst/extdata/EBF_Peaks.bed
inst/extdata/H3K4me3_Example.bw
inst/extdata/H3K9ac_Example.bw
inst/extdata/RNAPol2_Example.bw
inst/js
inst/js/dataTables.fixedColumns.min.js
inst/js/dataTables.scroller.min.js
inst/js/datatables.js
inst/js/jquery.datatables.css
inst/js/jquery.min.js
inst/js/tracktables.css
man
man/Intervals.Rd
man/MakeIGVSampleMetadata.Rd
man/MakeIGVSession.Rd
man/MakeIGVSessionXML.Rd
man/igvParam.Rd
man/makebedtable.Rd
man/maketracktable.Rd
vignettes
vignettes/tracktables.Rnw
tracktables documentation built on May 20, 2017, 10:29 p.m.

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