tracktables: Build IGV tracks and HTML reports

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

AuthorTom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang
Date of publicationNone
MaintainerTom Carroll <tc.infomatics@gmail.com>
LicenseGPL (>= 3)
Version1.8.1

View on Bioconductor

Files in this package

tracktables/DESCRIPTION
tracktables/NAMESPACE
tracktables/R
tracktables/R/tracktablesFunctions.R
tracktables/build
tracktables/build/vignette.rds
tracktables/data
tracktables/data/Intervals.rda
tracktables/inst
tracktables/inst/NEWS.Rd
tracktables/inst/doc
tracktables/inst/doc/EBFGI.html
tracktables/inst/doc/EBFigv.xml
tracktables/inst/doc/H3K4me3igv.xml
tracktables/inst/doc/H3K9acigv.xml
tracktables/inst/doc/IGVDirectory
tracktables/inst/doc/IGVDirectory/EBFGI.html
tracktables/inst/doc/IGVDirectory/EBFigv.xml
tracktables/inst/doc/IGVDirectory/H3K4me3igv.xml
tracktables/inst/doc/IGVDirectory/H3K9acigv.xml
tracktables/inst/doc/IGVDirectory/IGVEx3.html
tracktables/inst/doc/IGVDirectory/RNAPol2igv.xml
tracktables/inst/doc/IGVDirectory/SampleMetadata.txt
tracktables/inst/doc/IGVDirectory/extdata
tracktables/inst/doc/IGVDirectory/extdata/EBF_Example.bw
tracktables/inst/doc/IGVDirectory/extdata/EBF_Peaks.bed
tracktables/inst/doc/IGVDirectory/extdata/H3K4me3_Example.bw
tracktables/inst/doc/IGVDirectory/extdata/H3K9ac_Example.bw
tracktables/inst/doc/IGVDirectory/extdata/RNAPol2_Example.bw
tracktables/inst/doc/IGVEx3.html
tracktables/inst/doc/IGV_Example.html
tracktables/inst/doc/RNAPol2igv.xml
tracktables/inst/doc/SampleMetadata.txt
tracktables/inst/doc/index.html
tracktables/inst/doc/markdownexample.Rmd
tracktables/inst/doc/markdownexample.html
tracktables/inst/doc/markdownexample.md
tracktables/inst/doc/markdownexample_files
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/bootstrap-responsive.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/bootstrap-responsive.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/bootstrap.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/bootstrap.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/cerulean.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/cosmo.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/flatly.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/Lato.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/LatoBlack.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/LatoBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/LatoItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/Lora.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/LoraBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/LoraBoldItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/LoraItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/NewsCycle.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/NewsCycleBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/OpenSans.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/OpenSansBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/OpenSansBoldItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/OpenSansItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/OpenSansLight.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/OpenSansLightItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/RalewayBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/Telex.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/fonts/Ubuntu.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/journal.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/readable.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/spacelab.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/css/united.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/img
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/img/glyphicons-halflings-white.png
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/img/glyphicons-halflings.png
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/js
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/js/bootstrap.js
tracktables/inst/doc/markdownexample_files/bootstrap-2.3.2/js/bootstrap.min.js
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/bootstrap-theme.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/bootstrap-theme.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/bootstrap.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/bootstrap.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/cerulean.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/cosmo.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/flatly.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/Lato.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/LatoBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/LatoItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/NewsCycle.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/NewsCycleBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/OpenSans.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/OpenSansBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/OpenSansBoldItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/OpenSansItalic.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/Raleway.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/RalewayBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/SourceSansPro.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/SourceSansProBold.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/SourceSansProLight.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/fonts/Ubuntu.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/journal.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/readable.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/spacelab.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/css/united.min.css
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/fonts
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.eot
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.svg
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.ttf
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.woff
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/js
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/js/bootstrap.js
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/js/bootstrap.min.js
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/shim
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/shim/html5shiv.min.js
tracktables/inst/doc/markdownexample_files/bootstrap-3.3.1/shim/respond.min.js
tracktables/inst/doc/markdownexample_files/highlight
tracktables/inst/doc/markdownexample_files/highlight/default.css
tracktables/inst/doc/markdownexample_files/highlight/highlight.js
tracktables/inst/doc/markdownexample_files/highlight/textmate.css
tracktables/inst/doc/markdownexample_files/jquery-1.11.0
tracktables/inst/doc/markdownexample_files/jquery-1.11.0/jquery.min.js
tracktables/inst/doc/tracktables.R
tracktables/inst/doc/tracktables.Rnw
tracktables/inst/doc/tracktables.pdf
tracktables/inst/extdata
tracktables/inst/extdata/EBF_Example.bw
tracktables/inst/extdata/EBF_Peaks.bed
tracktables/inst/extdata/H3K4me3_Example.bw
tracktables/inst/extdata/H3K9ac_Example.bw
tracktables/inst/extdata/RNAPol2_Example.bw
tracktables/inst/js
tracktables/inst/js/dataTables.fixedColumns.min.js
tracktables/inst/js/dataTables.scroller.min.js
tracktables/inst/js/datatables.js
tracktables/inst/js/jquery.datatables.css
tracktables/inst/js/jquery.min.js
tracktables/inst/js/tracktables.css
tracktables/man
tracktables/man/Intervals.Rd tracktables/man/MakeIGVSampleMetadata.Rd tracktables/man/MakeIGVSession.Rd tracktables/man/MakeIGVSessionXML.Rd tracktables/man/igvParam.Rd tracktables/man/makebedtable.Rd tracktables/man/maketracktable.Rd
tracktables/vignettes
tracktables/vignettes/tracktables.Rnw

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