qcmetrics: A Framework for Quality Control

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The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author
Laurent Gatto
Date of publication
None
Maintainer
Laurent Gatto <lg390@cam.ac.uk>
License
GPL-2
Version
1.12.0
URLs

View on Bioconductor

Man pages

n15qc
N15 labelling QC report
psm
15N example data
Qc2Tex
'QcMetric' sectioning functions
QcMetadata-class
The '"QcMetadata"' class
QcMetric-class
The '"QcMetric"' class for QC items
QcMetrics-class
The '"QcMetrics"' class for collections of QC items
qcReport-methods
Automatic report generation
rnadeg
A simple RNA degradation QC for Affymetrix arrays

Files in this package

qcmetrics/DESCRIPTION
qcmetrics/NAMESPACE
qcmetrics/NEWS
qcmetrics/R
qcmetrics/R/AllGenerics.R
qcmetrics/R/QcMetadata.R
qcmetrics/R/QcMetric.R
qcmetrics/R/QcMetrics.R
qcmetrics/R/qc.R
qcmetrics/R/reporting.R
qcmetrics/R/reporting_knitr.R
qcmetrics/R/reporting_nozzle.R
qcmetrics/README.md
qcmetrics/build
qcmetrics/build/vignette.rds
qcmetrics/data
qcmetrics/data/n15psm.rda
qcmetrics/inst
qcmetrics/inst/doc
qcmetrics/inst/doc/qcmetrics.R
qcmetrics/inst/doc/qcmetrics.Rnw
qcmetrics/inst/doc/qcmetrics.pdf
qcmetrics/inst/extdata
qcmetrics/inst/extdata/deg.rda
qcmetrics/inst/extdata/exp.rda
qcmetrics/inst/extdata/yqc.rda
qcmetrics/inst/scripts
qcmetrics/inst/scripts/makeexp.R
qcmetrics/inst/templates
qcmetrics/inst/templates/knitr-template.Rnw
qcmetrics/man
qcmetrics/man/Qc2Tex.Rd
qcmetrics/man/QcMetadata-class.Rd
qcmetrics/man/QcMetric-class.Rd
qcmetrics/man/QcMetrics-class.Rd
qcmetrics/man/n15qc.Rd
qcmetrics/man/psm.Rd
qcmetrics/man/qcReport-methods.Rd
qcmetrics/man/rnadeg.Rd
qcmetrics/vignettes
qcmetrics/vignettes/qcmetrics.Rnw
qcmetrics/vignettes/qcmetrics.bib