qcmetrics: A Framework for Quality Control

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")
AuthorLaurent Gatto
Bioconductor views MassSpectrometry Microarray Proteomics QualityControl ReportWriting Software Visualization
Date of publicationNone
MaintainerLaurent Gatto <lg390@cam.ac.uk>
LicenseGPL-2
Version1.14.0
https://github.com/lgatto/qcmetrics

View on Bioconductor

Functions

as.data.frame.QcMetrics Man page
class:QcMetadata Man page
class:QcMetric Man page
class:QcMetrics Man page
description<-,QcMetric,character-method Man page
description,QcMetric-method Man page
length,QcMetadata-method Man page
length,QcMetrics-method Man page
mdata Man page
mdata<- Man page
mdata<-,QcMetadata,list-method Man page
mdata,QcMetadata-method Man page
mdata<-,QcMetrics,list-method Man page
mdata,QcMetrics-method Man page
mdata<-,QcMetrics,QcMetadata-method Man page
metadata Man page
metadata<- Man page
metadata<-,QcMetadata,list-method Man page
metadata,QcMetadata-method Man page
metadata<-,QcMetrics,list-method Man page
metadata,QcMetrics-method Man page
metadata<-,QcMetrics,QcMetadata-method Man page
n15psm Man page
n15qc Man page
name Man page
name<- Man page
name<-,QcMetric,character-method Man page
name,QcMetric-method Man page
name<-,QcMetrics,character-method Man page
name,QcMetrics-method Man page
names<-,QcMetadata,character-method Man page
names,QcMetadata-method Man page
plot<- Man page
plot<-,QcMetric,function-method Man page
plot,QcMetric,missing-method Man page
print,QcMetadata-method Man page
psm Man page
Qc2Rmd Man page
Qc2Tex Man page
Qc2Tex2 Man page
Qc2Tex3 Man page
qcdata Man page
qcdata<- Man page
qcdata<-,QcMetric,ANY-method Man page
qcdata,QcMetric,character-method Man page
qcdata,QcMetric,missing-method Man page
qcdata,QcMetrics,ANY-method Man page
qcdata<-,QcMetrics,list-method Man page
qcenv Man page
qcenv<- Man page
qcenv<-,QcMetric,environment-method Man page
qcenv,QcMetric-method Man page
QcMetadata Man page
QcMetadata-class Man page
[,QcMetadata-method Man page
[[,QcMetadata-method Man page
QcMetric Man page
QcMetric-class Man page
QcMetrics Man page
QcMetrics-class Man page
[,QcMetrics-method Man page
[[,QcMetrics-method Man page
qcReport Man page
qcReport-methods Man page
qcReport,QcMetrics-method Man page
qcshow Man page
qcto Man page
reporting Man page
reporting_html Man page
reporting_nozzle Man page
reporting_pdf Man page
reporting_rmd Man page
reporting_tex Man page
rnadeg Man page
show<- Man page
show,QcMetadata-method Man page
show<-,QcMetric,function-method Man page
show,QcMetric-method Man page
show,QcMetrics-method Man page
status Man page
status<- Man page
status<-,QcMetric,logical-method Man page
status,QcMetric-method Man page
status<-,QcMetrics,logical-method Man page
status,QcMetrics-method Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/AllGenerics.R R/QcMetadata.R R/QcMetric.R R/QcMetrics.R R/qc.R R/reporting.R R/reporting_knitr.R R/reporting_nozzle.R
README.md
build
build/vignette.rds
data
data/n15psm.rda
inst
inst/doc
inst/doc/qcmetrics.R
inst/doc/qcmetrics.Rnw
inst/doc/qcmetrics.pdf
inst/extdata
inst/extdata/deg.rda
inst/extdata/exp.rda
inst/extdata/yqc.rda
inst/scripts
inst/scripts/makeexp.R
inst/templates
inst/templates/knitr-template.Rnw
man
man/Qc2Tex.Rd man/QcMetadata-class.Rd man/QcMetric-class.Rd man/QcMetrics-class.Rd man/n15qc.Rd man/psm.Rd man/qcReport-methods.Rd man/rnadeg.Rd
vignettes
vignettes/qcmetrics.Rnw
vignettes/qcmetrics.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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