Description Usage Arguments Value Author(s)
A simple wrapper for the QC of 15N labelling. The respective QC items are the distribution of PSM incorporation rates, distribution of log2 fold-changes and number of identified features. See the vignette for details.
1 2 3 |
object |
An |
fcol |
The name of the feature variables for the
protein identifiers (accession numbers for example), the
peptide sequences, the number of unique peptides for each
identified protein, the variable modifications identified
on the peptides and the N15 incorporation rate. These
must be provided in that order. Defaults are
|
inctr |
The minimum level of median incorporation
rate to set the QC item status to |
lfctr |
The range of accepted median PSM log2
fold-change for the QC item status to be set to
|
type |
The type of report to be saved. If missing
(default), no report is generated. See
|
reportname |
The name of the report, in case a
|
Invisibly returns the resulting QcMetrics
instance.
Laurent Gatto
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