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The qcmetrics
package provides a general framework to develope
quality control (QC) pipelines for any type of data that can be
imported into R
. The application of qcmetrics
can be schematised
in 5 points
QcMetric
instances.QcMetric
items into a QcMetrics
instance. qcReport
function using the QcMetrics
object of step 2 as input.QC pipelines and packages will be described and disseminated through the wiki.
qcmetrics is a Bioconductor package and should in installed with
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("qcmetrics")
If you prefer to install the development version (not recommended)
BiocManager::install("qcmetrics", version = "devel")
Either file a GitHub issue or use the Bioconductor support forum.
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