rnadeg: A simple RNA degradation QC for Affymetrix arrays

In qcmetrics: A Framework for Quality Control

Description

A simple wrapper function that uses affy's RNA degradation curves and yaqcaffy's actin and GAPDH 3'/5' ratios to generate a simple RNA degradation QcMetrics results. Optionally generates a QC report. See the qcmetrics vignette for an explanation of the function and an example.

Usage

  rnadeg(input, status, type,
    reportname = "rnadegradation")

Arguments

input	A character of CEL file names or an instance of class affybatch.
status	A logical of length 2 to set the respective QcMetric's statuses.
type	The type of the report to be generated. Is missing, no report is generated.
reportname	The name of the report.

Value

Invisibly return the QcMetrics for the input.

Author(s)

Laurent Gatto

See Also

QcMetric and QcMetrics for details about the QC infrastructure and qcReport for information about the report generation.

qcmetrics documentation built on Nov. 8, 2020, 7:45 p.m.