PGA: An package for identification of novel peptides by customized database derived from RNA-Seq
Version 1.6.0

This package provides functions for construction of customized protein databases based on RNA-Seq data with/without genome guided, database searching, post-processing and report generation. This kind of customized protein database includes both the reference database (such as Refseq or ENSEMBL) and the novel peptide sequences form RNA-Seq data.

Getting started

Package details

AuthorShaohang Xu, Bo Wen
Bioconductor views MassSpectrometry Proteomics RNASeq ReportWriting Sequencing Software
MaintainerBo Wen <wenbo@genomics.cn>, Shaohang Xu <xsh.skye@gmail.com>
LicenseGPL-2
Version1.6.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("PGA")

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PGA documentation built on May 31, 2017, 11:08 a.m.