PGA: An package for identification of novel peptides by customized database derived from RNA-Seq

This package provides functions for construction of customized protein databases based on RNA-Seq data with/without genome guided, database searching, post-processing and report generation. This kind of customized protein database includes both the reference database (such as Refseq or ENSEMBL) and the novel peptide sequences form RNA-Seq data.

Getting started

Package details

AuthorShaohang Xu, Bo Wen
Bioconductor views ImmunoOncology MassSpectrometry Proteomics RNASeq ReportWriting Sequencing Software
MaintainerBo Wen <[email protected]>, Shaohang Xu <[email protected]>
LicenseGPL-2
Version1.16.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("PGA")

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PGA documentation built on Oct. 31, 2019, 10:30 a.m.