API for PGA
An package for identification of novel peptides by customized database derived from RNA-Seq

Global functions
.base_transfer Source code
.extract_peptides Source code
.gen_splicmatrix Source code
.java.executable Source code
.juc_type Source code
.left_seq_extract Source code
.mut_count_pro Source code
.mut_freq_heatmap Source code
.onAttach Source code
.peptide_number_of_ntx Source code
.precursor_error_hist Source code
.right_seq_extract Source code
.spplot Source code
.translate_dna Source code
.translate_dna2protein Source code
.wm_charge_bar Source code
.wm_evalue_hist Source code
.wm_mass_hist Source code
OutputNovelJun2 Source code
OutputVarproseq2 Source code
Outputaberrant2 Source code
PrepareAnnotationEnsembl2 Man page Source code
PrepareAnnotationRefseq2 Man page Source code
Sys.which2 Source code
Tab2Range Source code
addGeneName4Ensembl Man page
buildFusionProteinDB Man page Source code
buildTargetDecoyDB Source code
check_parser Source code
createProDB4DenovoRNASeq Man page
dbCreator Man page Source code
easyRun Man page Source code
getNovelTx Source code
mybarplot Source code
parserGear Man page Source code
reportGear Man page Source code
reportIDL Source code
runTandem Man page Source code
PGA documentation built on Nov. 8, 2020, 6:20 p.m.