SpeCond: Condition specific detection from expression data

This package performs a gene expression data analysis to detect condition-specific genes. Such genes are significantly up- or down-regulated in a small number of conditions. It does so by fitting a mixture of normal distributions to the expression values. Conditions can be environmental conditions, different tissues, organs or any other sources that you wish to compare in terms of gene expression.

AuthorFlorence Cavalli
Date of publicationNone
MaintainerFlorence Cavalli <florence@ebi.ac.uk>
LicenseLGPL (>=2)
Version1.28.0

View on Bioconductor

Functions

createParameterMatrix Man page
expressionSpeCondExample Man page
expSetSpeCondExample Man page
fitNoPriorWithExclusion Man page
fitPrior Man page
getDefaultParameter Man page
getFullHtmlSpeCondResult Man page
getGeneHtmlPage Man page
getMatrixFromExpressionSet Man page
getProfile Man page
getSpecificOutliersStep1 Man page
getSpecificResult Man page
simulatedSpeCondData Man page
SpeCond Man page
writeGeneResult Man page
writeSpeCondResult Man page
writeUniqueProfileSpecificResult Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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