expSetSpeCondExample: An ExpressionSet example object used in the SpeCond package

Description Usage Format Author(s) See Also Examples

Description

expSetSpeCondExample is an ExpressionSet example object used as an example for the SpeCond package. This ExpressionSet only contains an expression matrix and the phenoData. This object has only the purpose of illustrating how SpeCond can be used with an ExpressionSet input object.

Usage

1

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots [email protected] phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. [email protected] varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] "Tissue names" "Experience number" .. .. [email protected] data :'data.frame': 64 obs. of 2 variables: .. .. .. ..$ Tissue: Factor w/ 32 levels "Adrenal_cortex",..: 23 23 5 5 1 1 16 16 32 32 ... .. .. .. .. ..- attr(*, "names")= chr [1:64] "S_1" "S_2" "S_3" "S_4" ... .. .. .. ..$ Exp : Factor w/ 2 levels "Exp1","Exp2": 1 2 1 2 1 2 1 2 1 2 ... .. .. .. .. ..- attr(*, "names")= chr [1:64] "S_1" "S_2" "S_3" "S_4" ... .. .. [email protected] dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. [email protected] .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. [email protected] .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0

Author(s)

Florence Cavalli, [email protected]

See Also

getMatrixFromExpressionSet

Examples

1

SpeCond documentation built on Nov. 17, 2017, 8:24 a.m.