writeSpeCondResult: Write in text files the main result of the SpeCond function

In SpeCond: Condition specific detection from expression data

Description

writeSpeCondResult produces three text files: - The table of the gene detected as specific and in which condition they are specific (0: no specific, 1: specific up-regulated, -1:specific down-regulated). The default name is file.name.profile="specific_profile.txt". - The list of the specific genes. The default name is: "list_specific_probeset.txt". - The table of the unique specific profiles detected. The default name is: "specific_unique_profile.txt".

Usage

writeSpeCondResult(L.specific.result, file.name.profile =
 "specific_profile.txt", file.specific.gene = "list_specific_gene.txt", 
 file.name.unique.profile = "specific_unique_profile.txt")

Arguments

L.specific.result	The L.specific.result list of the included in the result of the main SpeCond function: generalResult$specificResult$L.specific.result
file.name.profile	The name of the produced file containing the gene's profiles
file.specific.gene	The name of the produced file containing the list of the specific genes
file.name.unique.profile	The name of the produced file containing the unique gene's profiles

Author(s)

Florence Cavalli, [e-mail]

See Also

SpeCond, getProfile, writeUniqueProfileSpecifcResult, writeGeneResult

Examples

library(SpeCond)
data(expressionSpeCondExample)
##Perform the condition specific detection analysis with SpeCond()
generalResult=SpeCond(expressionSpeCondExample, param.detection=NULL, 
 multitest.correction.method="BY", prefix.file="E", print.hist.pv=TRUE, fit1=NULL, 
 fit2=NULL, specificOutlierStep1=NULL)
 specificResult=generalResult$specificResult

##write the SpeCond results files
 writeSpeCondResult(specificResult$L.specific.result,file.name.profile=
 "Example_specific_profile.txt", file.specific.gene="Example_list_specific_gene.txt",
  file.name.unique.profile="Example_specific_unique_profile.txt")

SpeCond documentation built on Nov. 8, 2020, 4:57 p.m.