writeUniqueProfileSpecificResult: Write the specific profiles from the SpeCond analysis
In SpeCond: Condition specific detection from expression data

Description Usage Arguments Author(s) See Also Examples

View source: R/fct_SpeCond_visualisation.R

Produces a text file with the unique specific profiles among the conditions detected by the SpeCond analysis.

1 2	writeUniqueProfileSpecificResult(L.specific.result, file.name.unique.profile = "specific.unique_profile.txt", full.list.gene = FALSE)

`L.specific.result`	the `L.specific.result` list of the included in the result of the main `SpeCond` function: generalResult$specificResult$L.specific.result
`file.name.unique.profile`	the name of the produced file containing the gene's profiles
`full.list.gene`	If TRUE, the last column correspond to the gene's names which have the profile described in the row

Florence Cavalli, florence@ebi.ac.uk

SpeCond, getProfile, writeSpeCondResult, writeGeneResult

library(SpeCond)
data(expressionSpeCondExample)
##Perform the condition specific detection analysis with SpeCond()
generalResult=SpeCond(expressionSpeCondExample, 
  param.detection=NULL, multitest.correction.method="BY", prefix.file="E", 
  print.hist.pv=TRUE, fit1=NULL, fit2=NULL, specificOutlierStep1=NULL)
specificResult=generalResult$specificResult

##write the result file
writeUniqueProfileSpecificResult(L.specific.result=specificResult$L.specific.result,
  file.name.unique.profile="Example_specific_unique_profile.txt", full.list.gene=FALSE)