expressionSpeCondExample: The expression matrix example used in the SpeCond package

In SpeCond: Condition specific detection from expression data

Description

expressionSpeCondExample is expression value matrix (log2) used as an example for the SpeCond package. This is a subset of a new analysis of the Su et al, 2008 data. The columns are human tissues, the rows are probeset IDs.

Usage

data(expressionSpeCondExample)

Format

A matrix of 220 rows and 32 columns

Author(s)

Florence Cavalli, [e-mail]

Source

Su et al, PNAS, 2004, 'A gene atlas of the mouse and human protein-encoding transcriptomes'

Examples

data(expressionSpeCondExample)

Example output

Loading required package: mclust
Package 'mclust' version 5.4.3
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Loading required package: grid
Spam version 2.2-2 (2019-03-07) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: 'spam'

The following objects are masked from 'package:base':

    backsolve, forwardsolve

Loading required package: maps

Attaching package: 'maps'

The following object is masked from 'package:mclust':

    map

See https://github.com/NCAR/Fields for
 an extensive vignette, other supplements and source code 
Loading required package: hwriter
Loading required package: RColorBrewer

SpeCond documentation built on Nov. 8, 2020, 4:57 p.m.