expressionSpeCondExample is expression value matrix (log2) used as an example for the SpeCond package. This is a subset of a new analysis of the Su et al, 2008 data. The columns are human tissues, the rows are probeset IDs.
A matrix of 220 rows and 32 columns
Florence Cavalli, email@example.com
Su et al, PNAS, 2004, 'A gene atlas of the mouse and human protein-encoding transcriptomes'
Loading required package: mclust Package 'mclust' version 5.4.3 Type 'citation("mclust")' for citing this R package in publications. Loading required package: Biobase Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colMeans, colSums, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: fields Loading required package: spam Loading required package: dotCall64 Loading required package: grid Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the suffix '.spam' to the function name, e.g. 'help( chol.spam)'. Attaching package: 'spam' The following objects are masked from 'package:base': backsolve, forwardsolve Loading required package: maps Attaching package: 'maps' The following object is masked from 'package:mclust': map See https://github.com/NCAR/Fields for an extensive vignette, other supplements and source code Loading required package: hwriter Loading required package: RColorBrewer
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