pcaExplorer: Interactive Visualization of RNA-seq Data Using a Principal Components Approach

This package provides functionality for interactive visualization of RNA-seq datasets based on Principal Components Analysis. The methods provided allow for quick information extraction and effective data exploration. A Shiny application encapsulates the whole analysis.

AuthorFederico Marini [aut, cre]
Date of publicationNone
MaintainerFederico Marini <marinif@uni-mainz.de>
LicenseMIT + file LICENSE
Version2.0.0
https://github.com/federicomarini/pcaExplorer

View on Bioconductor

Files in this package

pcaExplorer/DESCRIPTION
pcaExplorer/LICENSE
pcaExplorer/NAMESPACE
pcaExplorer/NEWS
pcaExplorer/R
pcaExplorer/R/correlatePCs.R pcaExplorer/R/distro_expr.R pcaExplorer/R/genespca.R pcaExplorer/R/get_annotation.R pcaExplorer/R/hi_loadings.R pcaExplorer/R/makeds.R pcaExplorer/R/pair_corr.R pcaExplorer/R/pca2go.R pcaExplorer/R/pcaExplorer-pkg.R pcaExplorer/R/pcaExplorer.R pcaExplorer/R/pcaplot.R pcaExplorer/R/profile_explore.R
pcaExplorer/README.md
pcaExplorer/build
pcaExplorer/build/vignette.rds
pcaExplorer/inst
pcaExplorer/inst/doc
pcaExplorer/inst/doc/pcaExplorer.R
pcaExplorer/inst/doc/pcaExplorer.Rmd
pcaExplorer/inst/doc/pcaExplorer.html
pcaExplorer/inst/extdata
pcaExplorer/inst/extdata/about.md
pcaExplorer/inst/extdata/instructions.md
pcaExplorer/inst/extdata/reportTemplate.Rmd
pcaExplorer/man
pcaExplorer/man/correlatePCs.Rd pcaExplorer/man/distro_expr.Rd pcaExplorer/man/geneprofiler.Rd pcaExplorer/man/genespca.Rd pcaExplorer/man/get_annotation.Rd pcaExplorer/man/get_annotation_orgdb.Rd pcaExplorer/man/hi_loadings.Rd pcaExplorer/man/limmaquickpca2go.Rd pcaExplorer/man/makeExampleDESeqDataSet_multifac.Rd pcaExplorer/man/pair_corr.Rd pcaExplorer/man/pca2go.Rd pcaExplorer/man/pcaExplorer.Rd pcaExplorer/man/pcaplot.Rd pcaExplorer/man/pcaplot3d.Rd pcaExplorer/man/pcascree.Rd pcaExplorer/man/plotPCcorrs.Rd pcaExplorer/man/topGOtable.Rd
pcaExplorer/tests
pcaExplorer/tests/testthat
pcaExplorer/tests/testthat.R
pcaExplorer/tests/testthat/test_correlatePCs.R
pcaExplorer/tests/testthat/test_hiloadings.R
pcaExplorer/tests/testthat/test_makeDS.R
pcaExplorer/tests/testthat/test_pca2go.R
pcaExplorer/tests/testthat/test_pcagenes.R
pcaExplorer/tests/testthat/test_pcasamples.R
pcaExplorer/tests/testthat/test_shiny.R
pcaExplorer/vignettes
pcaExplorer/vignettes/newsnap_01_upload.png
pcaExplorer/vignettes/newsnap_02_instructions.png
pcaExplorer/vignettes/newsnap_03_countstable.png
pcaExplorer/vignettes/newsnap_04_overview.png
pcaExplorer/vignettes/newsnap_05_samples.png
pcaExplorer/vignettes/newsnap_06_genes.png
pcaExplorer/vignettes/newsnap_07_finder.png
pcaExplorer/vignettes/newsnap_08_pca2go.png
pcaExplorer/vignettes/newsnap_09_multifac.png
pcaExplorer/vignettes/newsnap_10_editor.png
pcaExplorer/vignettes/newsnap_11_about.png
pcaExplorer/vignettes/pcaExplorer.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.