Description Usage Arguments Value Examples
View source: R/get_annotation.R
Get an annotation data frame from org db packages
1 | get_annotation_orgdb(dds, orgdb_species, idtype)
|
dds |
A |
orgdb_species |
Character string, named as the |
idtype |
Character, the ID type of the genes as in the row names of
|
A data frame for ready use in pcaExplorer
, retrieved from the
org db packages
1 2 3 4 5 6 7 8 9 10 | library(airway)
data(airway)
airway
dds_airway <- DESeq2::DESeqDataSetFromMatrix(assay(airway),
colData = colData(airway),
design = ~dex+cell)
## Not run:
get_annotation_orgdb(dds_airway, "org.Hs.eg.db", "ENSEMBL")
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.