geneprofiler: Extract and plot the expression profile of genes

Description Usage Arguments Value Examples

View source: R/profile_explore.R

Description

Extract and plot the expression profile of genes

Usage

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geneprofiler(se, genelist = NULL, intgroup = "condition", plotZ = FALSE)

Arguments

se

A DESeqDataSet object, or a DESeqTransform object.

genelist

An array of characters, including the names of the genes of interest of which the profile is to be plotted

intgroup

A factor, needs to be in the colnames of colData(se)

plotZ

Logical, whether to plot the scaled expression values. Defaults to FALSE

Value

A plot of the expression profile for the genes

Examples

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dds <- makeExampleDESeqDataSet_multifac(betaSD_condition = 3, betaSD_tissue = 1)
rlt <- DESeq2::rlogTransformation(dds)
geneprofiler(rlt, paste0("gene", sample(1:1000, 20)))
geneprofiler(rlt, paste0("gene", sample(1:1000, 20)), plotZ = TRUE)

pcaExplorer documentation built on Nov. 8, 2020, 5:29 p.m.