EnrichmentBrowser: Seamless navigation through combined results of set-based and network-based enrichment analysis

The EnrichmentBrowser package implements essential functionality for the enrichment analysis of gene expression data. The analysis combines the advantages of set-based and network-based enrichment analysis in order to derive high-confidence gene sets and biological pathways that are differentially regulated in the expression data under investigation. Besides, the package facilitates the visualization and exploration of such sets and pathways.

AuthorLudwig Geistlinger, Gergely Csaba, Ralf Zimmer
Date of publicationNone
MaintainerLudwig Geistlinger <Ludwig.Geistlinger@bio.ifi.lmu.de>
LicenseArtistic-2.0
Version2.4.5

View on Bioconductor

Files in this package

EnrichmentBrowser/DESCRIPTION
EnrichmentBrowser/NAMESPACE
EnrichmentBrowser/NEWS
EnrichmentBrowser/R
EnrichmentBrowser/R/GSEA.1.0.R EnrichmentBrowser/R/SAMGS.R EnrichmentBrowser/R/combine.R EnrichmentBrowser/R/compileGRN.R EnrichmentBrowser/R/deAna.R EnrichmentBrowser/R/downloadKEGGPathways.R EnrichmentBrowser/R/ebrowser.R EnrichmentBrowser/R/examples.R EnrichmentBrowser/R/getGenesets.R EnrichmentBrowser/R/ggea.R EnrichmentBrowser/R/ggeaGraph.R EnrichmentBrowser/R/html.R EnrichmentBrowser/R/mapIds.R EnrichmentBrowser/R/nbea.R EnrichmentBrowser/R/normalize.R EnrichmentBrowser/R/pathview2.R EnrichmentBrowser/R/plots.R EnrichmentBrowser/R/probeEset2geneEset.R EnrichmentBrowser/R/readEset.R EnrichmentBrowser/R/sbea.R EnrichmentBrowser/R/utils.R EnrichmentBrowser/R/zzz.R
EnrichmentBrowser/build
EnrichmentBrowser/build/vignette.rds
EnrichmentBrowser/inst
EnrichmentBrowser/inst/CITATION
EnrichmentBrowser/inst/doc
EnrichmentBrowser/inst/doc/EnrichmentBrowser.R
EnrichmentBrowser/inst/doc/EnrichmentBrowser.Rnw
EnrichmentBrowser/inst/doc/EnrichmentBrowser.pdf
EnrichmentBrowser/inst/extdata
EnrichmentBrowser/inst/extdata/air_lgc.tab
EnrichmentBrowser/inst/extdata/exprs.tab
EnrichmentBrowser/inst/extdata/fData.tab
EnrichmentBrowser/inst/extdata/hsa_kegg_gs.gmt
EnrichmentBrowser/inst/extdata/hsa_kegg_pwys.zip
EnrichmentBrowser/inst/extdata/pData.tab
EnrichmentBrowser/man
EnrichmentBrowser/man/comb.ea.results.Rd EnrichmentBrowser/man/compile.grn.from.kegg.Rd EnrichmentBrowser/man/config.ebrowser.Rd EnrichmentBrowser/man/de.ana.Rd EnrichmentBrowser/man/download.kegg.pathways.Rd EnrichmentBrowser/man/ea.browse.Rd EnrichmentBrowser/man/ebrowser.Rd EnrichmentBrowser/man/get.go.genesets.Rd EnrichmentBrowser/man/get.kegg.genesets.Rd EnrichmentBrowser/man/ggea.graph.Rd EnrichmentBrowser/man/make.example.data.Rd EnrichmentBrowser/man/map.ids.Rd EnrichmentBrowser/man/nbea.Rd EnrichmentBrowser/man/normalize.Rd EnrichmentBrowser/man/plots.Rd EnrichmentBrowser/man/probe.2.gene.eset.Rd EnrichmentBrowser/man/read.eset.Rd EnrichmentBrowser/man/sbea.Rd
EnrichmentBrowser/vignettes
EnrichmentBrowser/vignettes/EnrichmentBrowser.Rnw
EnrichmentBrowser/vignettes/comb_ebrowse.png
EnrichmentBrowser/vignettes/ora_ebrowse.png
EnrichmentBrowser/vignettes/refs.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.