EnrichmentBrowser: Seamless navigation through combined results of set-based and network-based enrichment analysis

The EnrichmentBrowser package implements essential functionality for the enrichment analysis of gene expression data. The analysis combines the advantages of set-based and network-based enrichment analysis in order to derive high-confidence gene sets and biological pathways that are differentially regulated in the expression data under investigation. Besides, the package facilitates the visualization and exploration of such sets and pathways.

Package details

AuthorLudwig Geistlinger [aut, cre], Gergely Csaba [aut], Mara Santarelli [ctb], Mirko Signorelli [ctb], Marcel Ramos [ctb], Levi Waldron [ctb], Ralf Zimmer [aut]
Bioconductor views DifferentialExpression GeneExpression GeneSetEnrichment GraphAndNetwork ImmunoOncology Microarray Network NetworkEnrichment Pathways RNASeq ReportWriting Visualization
MaintainerLudwig Geistlinger <Ludwig_Geistlinger@hms.harvard.edu>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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EnrichmentBrowser documentation built on Dec. 12, 2020, 2 a.m.