API for EnrichmentBrowser
Seamless navigation through combined results of set-based and network-based enrichment analysis

Global functions
GS.format.dataframe.to.list Source code
GSEA Source code
GSEA.EnrichmentScore Source code
GSEA.EnrichmentScore2 Source code
GSEA.GeneRanking Source code
SAMGS Source code
SAMGS2 Source code
annoP2G Source code
annoPkg2Org Source code
annotateSE Source code
approxPval Source code
availableOrgPkgs Source code
cacheResource Source code
cepa Source code
checkOutDir Source code
chooseID Source code
clipper Source code
comb.ea.results Man page Source code
combRanks Source code
combResults Man page Source code
compDE Source code
compile.grn.from.kegg Man page Source code
compileGRN Man page Source code
compileGRNFromGraphite Source code
compileGRNFromKEGG Source code
config.ebrowser Man page Source code
configEBrowser Man page Source code
constructGGEAGraph Source code
createGS Source code
createIdentifier Source code
createIndex Source code
de.ana Man page Source code
deAna Man page Source code
degraph Source code
detectDataType Source code
detectGSType Source code
detectGeneIdType Source code
determineEdgeColor Source code
determineEdgeLwd Source code
determineNodeColor Source code
dmap Source code
dmapSE Source code
download.kegg.pathways Man page Source code
downloadPathways Man page Source code
dwnldAllKeggGS Source code
dwnldSelectedKeggGS Source code
ea.browse Man page Source code
eaBrowse Man page Source code
ebm Source code
ebrowser Man page Source code
exclNaIds Source code
exprsHeatmap Man page Source code
extrPwyDat Source code
extractKeggGS Source code
extractPwys Source code
filterEdges Source code
fisherComb Source code
formatEAResult Source code
ganpa Source code
geneReport Source code
geneTable Source code
get.go.genesets Man page Source code
get.kegg.genesets Man page Source code
getAnnoPkg Source code
getEdgeType Source code
getFirstToId Source code
getGO Source code
getGOFromBiomart Source code
getGOFromGODB Source code
getGeneAnno Source code
getGeneFreqWeights Source code
getGenesByPwy Source code
getGenesets Man page Source code
getHTMLOfMarkedPathway Source code
getKEGG Source code
getKEGGDisplayName Source code
getKEGGRels Source code
getNodeName Source code
getOrgIdType Source code
getRanks Source code
getResourceFromCache Source code
ggea Man page Source code
ggea.graph Man page Source code
ggea.graph.legend Man page Source code
ggeaGraph Man page Source code
ggeaGraphLegend Man page Source code
global.GSA Source code
global.GSEA Source code
global.PADOG Source code
global.SAMGS Source code
globaltest Source code
gmt2cmat Source code
grn2adjm Source code
grn2gnet Source code
gs.ranking Man page Source code
gsList2Collect Source code
gsRanking Man page Source code
gsa Source code
gsea Man page Source code
gsva Source code
idMap Man page Source code
idMap2 Source code
idMapGSC Source code
idTypes Man page Source code
isAvailable Man page Source code
local.deAna Source code
local.s2n Source code
local.t.SAM Source code
makeExampleData Man page Source code
makeExmplGRN Source code
makeExmplGS Source code
makeExmplRes Source code
makeExmplSE Source code
makeGGraphHTML Source code
makeGSC Source code
makeGSNames Source code
makeHmapHTML Source code
makeKGraphHTML Source code
makeKPathHTML Source code
makeKeggGSC Source code
makeSPIAData Source code
makeView Source code
makeVolcHTML Source code
map.ids Man page Source code
mgsa Source code
naTreat Source code
nbea Man page Source code
nbeaMethods Man page Source code
ncbiGeneLink Source code
nea Source code
netgsa Source code
normalize Man page Source code
onLoad Source code
ora Man page Source code
oraHypergeom Source code
org2pkg Source code
padog Source code
parse.genesets.from.GMT Man page Source code
parseGMT Source code
pathnet Source code
pathview2 Source code
pdistr Man page Source code
permEdgesPval Source code
permGenesPval Source code
permSamplesPval Source code
plotGGEAGraph Source code
plots Man page
prepGS Source code
preprocSE Source code
probe.2.gene.eset Man page Source code
probe2gene Man page Source code
probe2geneAverage Source code
processDB Source code
pruneGRN Source code
pubmedLink Source code
queryGRN Source code
read.eset Man page Source code
readGRN Source code
readSE Man page Source code
resolveDuplicateIDs Source code
resolveMultiTo Source code
roast.camera Source code
rowMeansVars Source code
rseqSBEA Source code
sConsistent Source code
sSig Source code
sWholenumber Source code
sam.TlikeStat Source code
sbea Man page Source code
sbeaMethods Man page Source code
scoreGRN Source code
sortGeneTable Source code
spia Man page Source code
stoufferComb Source code
topogsa Source code
transformGRN Source code
transformGS Source code
viewGraph Source code
viewPath Source code
viewSet Source code
volcano Man page Source code
writeGMT Man page Source code
EnrichmentBrowser documentation built on Nov. 1, 2018, 2:11 a.m.