Biocview "NetworkEnrichment"

Affected pathway ranking in differential gene expression analysis
analysis of co-regulatory network motifs and inference of 'dual regulons'.
analysis of co-regulatory network motifs and inference of 'dual regulons'.
analysis of co-regulatory network motifs and inference of 'dual regulons'.
Analysis of co-regulatory network motifs and inference of 'dual regulons'
An R Package for Adjusting Bias in Gene Set Enrichment Analysis
An R package for pathway analysis using topological information
An R package for pathway analysis using topological information
An R package to perform the network enrichment analysis (NEA).
Co-Expression Modules identification Tool
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
DeMAND
DeMAND
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
Ensemble of Gene Set Enrichment Analyses
Extending guilt by association by degree
Extending guilt by association by degree
Finds Gene Co-expression Modules
Functional Gene Networks derived from biological enrichment analyses
Functional Gene Networks derived from biological enrichment analyses
Functional similarities
Functional similarities
Identification and analysis of miRNA sponge interaction networks and modules
Identification of Functional Epigenetic Modules
Identification of Functional Epigenetic Modules
Identify oncogenes and tumor suppressor genes from omics data
Identify oncogenes and tumor suppressor genes from omics data
Identify oncogenes and tumor suppressor genes from omics data
Inference of Genetic Variants Driving Cellular Phenotypes
Inference of Genetic Variants Driving Cellular Phenotypes
Interaction Based Homogeneity for Evaluating Gene Lists
Interaction Based Homogeneity for Evaluating Gene Lists
miRNApath: Pathway Enrichment for miRNA Expression Data
miRNApath: Pathway Enrichment for miRNA Expression Data
Package for Topology-based Pathway Analysis of RNASeq data
Package for Topology-based Pathway Analysis of RNASeq data
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Rapid Integration of Term Annotation and Network resources
Rapid Integration of Term Annotation and Network resources
Rapid Integration of Term Annotation and Network resources
Reconstruction of transcriptional networks and analysis of master regulators
Reconstruction of transcriptional networks and analysis of master regulators
Routines for the functional analysis of biological networks
Routines for the functional analysis of biological networks
Seamless navigation through combined results of set-based and network-based enrichment analysis
Seamless navigation through combined results of set-based and network-based enrichment analysis
signet: Selection Inference in Gene NETworks
Significance-based Modules Integrating the Transcriptome and Epigenome
Significance-based Modules Integrating the Transcriptome and Epigenome
Significance-based Modules Integrating the Transcriptome and Epigenome
Spatial Analysis of Network Associations
Spatial Analysis of Network Associations
Survival analysis using transcriptional networks inferred by the RTN package
Survival analysis using transcriptional networks inferred by the RTN package
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Two-sample tests on a graph
Two-sample tests on a graph
VirtUaL ChIP-Seq data Analysis using Networks
Virtual Inference of Protein-activity by Enriched Regulon analysis
Virtual Inference of Protein-activity by Enriched Regulon analysis
Virtual Inference of Protein-activity by Enriched Regulon analysis