csbl-usp/CEMiTool: Co-expression Modules identification Tool

The CEMiTool package unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network.

Getting started

Package details

Bioconductor views GeneExpression GraphAndNetwork ImmunoOncology Network NetworkEnrichment Pathways RNASeq Transcriptomics mRNAMicroarray
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
csbl-usp/CEMiTool documentation built on Dec. 8, 2018, 3:26 p.m.