plot_beta_r2: Soft-threshold beta selection graph

In csbl-usp/CEMiTool: Co-expression Modules identification Tool

Soft-threshold beta selection graph

Description

Creates a graph showing each possible soft-threshold value and its corresponding R squared value

Usage

plot_beta_r2(cem, ...)

## S4 method for signature 'CEMiTool'
plot_beta_r2(cem, plot_title = "Scale independence (beta selection)")

Arguments

cem	Object of class CEMiTool.
...	Optional parameters.
plot_title	title of the graph

Value

Object of class CEMiTool with beta x R squared plot

Examples

# Get example CEMiTool object
data(cem)
# Plot scale-free model fit as a function of the soft-thresholding beta parameter choice
cem <- plot_beta_r2(cem)
# Check resulting plot
show_plot(cem, "beta_r2")

csbl-usp/CEMiTool documentation built on March 27, 2024, 5:14 a.m.