API for csbl-usp/CEMiTool
Co-expression Modules identification Tool

Global functions
CEMiTool-class Man page
StatQq Man page
StatQqLine Man page
adj_data Man page
adj_data,CEMiTool-method Man page
adj_data<- Man page
adj_data<-,CEMiTool-method Man page
cem Man page
cem_overlap Man page Source code
cemitool Man page Source code
diagnostic_report Man page
diagnostic_report,CEMiTool-method Man page
expr Man page
expr_data Man page
expr_data,CEMiTool-method Man page
expr_data<- Man page
expr_data<-,CEMiTool-method Man page
expr_pct_filter Man page Source code
filter_expr Man page
filter_expr,CEMiTool-method Man page
find_modules Man page
find_modules,CEMiTool-method Man page
fit_data Man page
fit_data,CEMiTool-method Man page
generate_report Man page
generate_report,CEMiTool-method Man page
geom_qq Man page Source code
geom_qq_line Man page Source code
get_adj Man page
get_adj,CEMiTool-method Man page
get_args Source code
get_beta_data Man page
get_beta_data,CEMiTool-method Man page
get_cemitool_r2_beta Man page
get_cemitool_r2_beta,CEMiTool-method Man page
get_connectivity Man page
get_connectivity,CEMiTool-method Man page
get_forced_beta Source code
get_hubs Man page
get_hubs,CEMiTool-method Man page
get_merged_mods Man page
get_merged_mods,CEMiTool-method Man page
get_mods Man page
get_mods,CEMiTool-method Man page
get_phi Man page
get_phi,CEMiTool-method Man page
gsea_data Man page
gsea_data,CEMiTool-method Man page
interactions_data Man page
interactions_data,CEMiTool-method Man page
interactions_data<- Man page
interactions_data<-,CEMiTool-method Man page
mod_colors Man page
mod_colors,CEMiTool-method Man page
mod_colors<- Man page
mod_colors<-,CEMiTool,character-method Man page
mod_gsea Man page
mod_gsea,CEMiTool-method Man page
mod_ora Man page
mod_ora,CEMiTool-method Man page
mod_summary Man page
mod_summary,CEMiTool-method Man page
module_genes Man page
module_genes,CEMiTool-method Man page
module_names Man page
module_names,CEMiTool-method Man page
new_cem Man page Source code
nmodules Man page
nmodules,CEMiTool-method Man page
ora Source code
ora_data Man page
ora_data,CEMiTool-method Man page
plot_beta_r2 Man page
plot_beta_r2,CEMiTool-method Man page
plot_gsea Man page
plot_gsea,CEMiTool-method Man page
plot_hist Man page
plot_hist,CEMiTool-method Man page
plot_interaction Source code
plot_interactions Man page
plot_interactions,CEMiTool-method Man page
plot_mean_k Man page
plot_mean_k,CEMiTool-method Man page
plot_mean_var Man page
plot_mean_var,CEMiTool-method Man page
plot_ora Man page
plot_ora,CEMiTool-method Man page
plot_ora_single Man page Source code
plot_profile Man page
plot_profile,CEMiTool-method Man page
plot_qq Man page
plot_qq,CEMiTool-method Man page
plot_sample_tree Man page
plot_sample_tree,CEMiTool-method Man page
read_gmt Man page Source code
sample_annot Man page
sample_annotation Man page
sample_annotation,CEMiTool-method Man page
sample_annotation<- Man page
sample_annotation<-,CEMiTool-method Man page
save_plots Man page
save_plots,CEMiTool-method Man page
show,CEMiTool-method Man page
show_plot Man page
show_plot,CEMiTool-method Man page
stat_qq Man page
stat_qq_line Man page
vst Man page Source code
write_files Man page
write_files,CEMiTool-method Man page
csbl-usp/CEMiTool documentation built on Nov. 8, 2017, 10:53 a.m.