get_connectivity: Calculate network connectivity

In csbl-usp/CEMiTool: Co-expression Modules identification Tool

Calculate network connectivity

Description

This function takes a CEMiTool object and returns the network connectivity.

Usage

get_connectivity(cem, ...)

## S4 method for signature 'CEMiTool'
get_connectivity(cem, beta)

Arguments

cem	Object of class CEMiTool containing the fit_indices slot
...	Optional parameters.
beta	A soft-thresholding value to be used for the network.

Value

The value of the network's connectivity.

Examples

# Get example expression data
data(expr0)
# Initialize new CEMiTool object with expression data
cem <- new_cem(expr0, filter=TRUE, apply_vst=FALSE)
# Get modules and beta data
cem <- find_modules(cem)
# Get network connectivity with example beta value 8
get_connectivity(cem, beta=8)

csbl-usp/CEMiTool documentation built on March 27, 2024, 5:14 a.m.