mod_summary: Co-expression module summarization

In csbl-usp/CEMiTool: Co-expression Modules identification Tool

Co-expression module summarization

Description

Summarizes modules using mean or eigengene expression.

Usage

mod_summary(cem, ...)

## S4 method for signature 'CEMiTool'
mod_summary(cem, method = c("mean", "median", "eigengene"), verbose = FALSE)

Arguments

cem	Object of class CEMiTool.
...	Optional parameters.
method	A character string indicating which summarization method is to be used. Can be 'eigengene', 'mean' or 'median'. Default is 'mean'.
verbose	Logical. If TRUE, reports analysis steps.

Value

A data.frame with summarized values.

Examples

# Get example CEMiTool object
data(cem)
# Summarize results
mod_summary <- mod_summary(cem)

csbl-usp/CEMiTool documentation built on March 27, 2024, 5:14 a.m.