plot_gsea: GSEA visualization

In csbl-usp/CEMiTool: Co-expression Modules identification Tool

GSEA visualization

Description

Creates a heatmap with the results of gene set enrichment analysis (GSEA) of co-expression modules

Usage

plot_gsea(cem, ...)

## S4 method for signature 'CEMiTool'
plot_gsea(cem, pv_cut = 0.05)

Arguments

cem	Object of class CEMiTool.
...	Optional parameters.
pv_cut	P-value cut-off. Default 0.05

Value

Object of class CEMiTool with GSEA plots

Examples

# Get example CEMiTool object
data(cem)
# Get example sample annotation file
# Run GSEA on network modules
cem <- mod_gsea(cem)
# Plot GSEA results
cem <- plot_gsea(cem)
# Check resulting plot
show_plot(cem, "gsea")

csbl-usp/CEMiTool documentation built on March 27, 2024, 5:14 a.m.