get_hubs: Get hubs

In csbl-usp/CEMiTool: Co-expression Modules identification Tool

Get hubs

Description

Returns n genes in each module with high connectivity.

Usage

get_hubs(cem, ...)

## S4 method for signature 'CEMiTool'
get_hubs(cem, n = 5, method = "adjacency")

Arguments

cem	Object of class CEMiTool.
...	Optional parameters.
n	Number of hubs to return from each module. If "all", returns all genes in decreasing order of connectivity. Default: 5.
method	Method for hub calculation. Either "adjacency" or "kME". Default: "adjacency"

Value

A list containing hub genes for each module and the value of the calculated method.

Examples

# Get example CEMiTool object
data(cem)
# Get module hubs
hubs <- get_hubs(cem, n=10, "adjacency")

csbl-usp/CEMiTool documentation built on March 27, 2024, 5:14 a.m.