SANTA: Spatial Analysis of Network Associations

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Getting started

Package details

AuthorAlex J. Cornish and Florian Markowetz
Bioconductor views Clustering Network NetworkEnrichment
MaintainerAlex J. Cornish <[email protected]>
LicenseGPL (>= 2)
Version2.20.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SANTA")

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SANTA documentation built on Nov. 1, 2018, 3:46 a.m.