elisabettasciacca/DEGGs: Differentially Expressed Gene-Gene pairs
The DEGGs package enables the exploration of differential gene-gene correlations across user-defined groups of samples. Provided with normalised counts and a design/metadata matrix, DEGGs extracts networks of biological group-specific interactions that can be interactively explored through a shiny user-friendly interface. For each gene–gene link, differential statistical significance and differential regression plots are provided through robust linear regression with interaction term.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | BiomedicalInformatics DifferentialExpression FeatureExtraction GeneExpression GraphAndNetwork ImmunoOncology Network NetworkEnrichment NetworkInference RNASeq Regression Sequencing ShinyApps Transcription Transcriptomics Visualization |
| Maintainer | |
| License | GPL-3 |
| Version | 0.99.0 |
| URL | https://github.com/elisabettasciacca/DEGGs |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
