Biocview "NetworkInference"

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
analysis of co-regulatory network motifs and inference of 'dual regulons'.
analysis of co-regulatory network motifs and inference of 'dual regulons'.
analysis of co-regulatory network motifs and inference of 'dual regulons'.
Analysis of co-regulatory network motifs and inference of 'dual regulons'
Bayesian Inference of Regulatory Influence on Expression (biRte)
Bayesian Inference of Regulatory Influence on Expression (biRte)
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
Benchmarking of several gene network inference methods
Benchmarking of several gene network inference methods
Benchmarking of several gene network inference methods
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
Dry lab for exploring miRNA-mRNA relationships
Dry lab for exploring miRNA-mRNA relationships
(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
epiNEM
epiNEM
epiNEM
Epistasis Analysis for Quantitative Traits by Functional Regression Model
Epistasis Analysis for Quantitative Traits by Functional Regression Model
Estimate protein complex membership using AP-MS protein data
Estimate protein complex membership using AP-MS protein data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Fit transcriptional regulatory networks using gene expression, priors, machine learning
GEne Network Inference with Ensemble of trees
Gene Regulatory Network Inference Using Time Series
Gene Regulatory Network Inference Using Time Series
Hidden Variable Dynamic Modeling
Hidden Variable Dynamic Modeling
Inference for predictive networks designed for (but not limited to) genomic data
Inference for predictive networks designed for (but not limited to) genomic data
Infers biological signatures from gene expression data
Infers biological signatures from gene expression data
In Silico Interactome
In Silico Interactome
Integration of CellNOptR to add missing links
Integration of CellNOptR to add missing links
JODA algorithm for quantifying gene deregulation using knowledge
JODA algorithm for quantifying gene deregulation using knowledge
Linear Programming Model for Network Inference
Linear Programming Model for Network Inference
Methylation regulation network inference with Conditional Mutual information based PC-algorithem
Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Mutual Information NETworks
Mutual Information NETworks
PANDA Algorithm
PANDA Algorithm
PANDA Algorithm
PANDA Algorithm
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
Prediction of pathway-related protein-protein interaction networks
Prediction of pathway-related protein-protein interaction networks
Protein-Protein Interaction Statistical Package
Protein-Protein Interaction Statistical Package
Rapid Integration of Term Annotation and Network resources
Rapid Integration of Term Annotation and Network resources
Rapid Integration of Term Annotation and Network resources
Reconstruction of transcriptional networks and analysis of master regulators
Reconstruction of transcriptional networks and analysis of master regulators
Regression-based network inference using Bayesian Model Averaging
Regression-based network inference using Bayesian Model Averaging
S-system parameter estimation method
S-system parameter estimation method
Survival analysis using transcriptional networks inferred by the RTN package
Survival analysis using transcriptional networks inferred by the RTN package
Synthetic Expression Data for Gene Regulatory Network Inference
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
training of logical models from indirect measurements of perturbation experiments
Transcription factor Inference through Gaussian process Reconstruction of Expression
Transcription factor Inference through Gaussian process Reconstruction of Expression
TRONCO, an R package for TRanslational ONCOlogy
TRONCO, an R package for TRanslational ONCOlogy
TRONCO, an R package for TRanslational ONCOlogy
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
Visualize all edges within a KEGG pathway and overlay LINCS data [option]