Biocview "NetworkInference"

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
Analysis of co-regulation and inference of 'dual regulons'
analysis of co-regulatory network motifs and inference of 'dual regulons'.
analysis of co-regulatory network motifs and inference of 'dual regulons'.
analysis of co-regulatory network motifs and inference of 'dual regulons'.
Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data
Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
A Toolkit for Flow And Mass Cytometry Data
A Toolkit for Flow And Mass Cytometry Data
A Toolkit for Flow And Mass Cytometry Data
Bayesian Inference of Regulatory Influence on Expression (biRte)
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
Benchmarking of several gene network inference methods
Benchmarking of several gene network inference methods
Benchmarking of several gene network inference methods
Biological Network Analysis
Biological Network Analysis
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)
Constructing gene regulatory networks from expression data through functional module inference
Constructing gene regulatory networks from expression data through functional module inference
Constructing gene regulatory networks from expression data through functional module inference
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
Differential co-expression/association network analysis
Dry lab for exploring miRNA-mRNA relationships
(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
epiNEM
epiNEM
Epistasis Analysis for Quantitative Traits by Functional Regression Model
Estimate protein complex membership using AP-MS protein data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Functional Network Analysis
Functional Network Analysis
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
GEne Network Inference with Ensemble of trees
GEne Network Inference with Ensemble of trees
Gene regulator enrichment analysis
Gene Regulatory Network Inference Using Time Series
Hidden Variable Dynamic Modeling
Inference for predictive networks designed for (but not limited to) genomic data
Infers biological signatures from gene expression data
In Silico Interactome
Integration of CellNOptR to add missing links
Integration of CellNOptR to add missing links
Integration of CellNOptR to add missing links
JODA algorithm for quantifying gene deregulation using knowledge
Linear Programming Model for Network Inference
Mixture Nested Effects Models
Mixture Nested Effects Models
Modeling networks for individual samples using LIONESS
Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Multi Omic Master Regulator Analysis
Multi Omic Master Regulator Analysis
Mutual Information NETworks
PANDA Algorithm
PANDA Algorithm
PANDA Algorithm
PANDA Algorithm
Phenotype-driven module identification
Phenotype-driven module identification
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
Predicting Interactomes from Co-Elution
Predicting Interactomes from Co-Elution
Predicting Interactomes from Co-Elution
Prediction of pathway-related protein-protein interaction networks
Probabilistic combinatorial nested effects model
Protein-Protein Interaction Statistical Package
Protein-Protein Interaction Statistical Package
Random walk with restart on multiplex and heterogeneous Networks
Random walk with restart on multiplex and heterogeneous Networks
Rapid Integration of Term Annotation and Network resources
Rapid Integration of Term Annotation and Network resources
Rapid Reconstruction of Time-Varying Gene Regulatory Networks
Regression-based network inference using Bayesian Model Averaging
Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)
Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)
regutools: an R package for data extraction from RegulonDB
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons
Single Cell Inference of Regulatory Activity
Sparse Partial Correlations On Gene Expression
Sparse Partial Correlations On Gene Expression
Sparse Partial Correlations On Gene Expression
Spatial quantile normalization
Spatial quantile normalization
S-system parameter estimation method
Survival analysis using transcriptional networks inferred by the RTN package
Survival analysis using transcriptional networks inferred by the RTN package
Synthetic Expression Data for Gene Regulatory Network Inference
Systems EPigenomics Inference of Regulatory Activity
Systems EPigenomics Inference of Regulatory Activity
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
training of logical models from indirect measurements of perturbation experiments
Transcriptional Data Guided fMRI Network Classification
Transcription factor Inference through Gaussian process Reconstruction of Expression
Transcription factor Inference through Gaussian process Reconstruction of Expression
TRONCO, an R package for TRanslational ONCOlogy
TRONCO, an R package for TRanslational ONCOlogy
Visualize all edges within a KEGG pathway and overlay LINCS data
Visualize all edges within a KEGG pathway and overlay LINCS data
Visualize all edges within a KEGG pathway and overlay LINCS data [option]