spqn: Spatial quantile normalization

The spqn package implements spatial quantile normalization (SpQN). This method was developed to remove a mean-correlation relationship in correlation matrices built from gene expression data. It can serve as pre-processing step prior to a co-expression analysis.

Package details

AuthorYi Wang [cre, aut], Kasper Daniel Hansen [aut]
Bioconductor views GraphAndNetwork NetworkInference Normalization
MaintainerYi Wang <yiwangthu5@gmail.com>
URL https://github.com/hansenlab/spqn
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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spqn documentation built on Nov. 8, 2020, 8:10 p.m.