FRGEpistasis: Epistasis Analysis for Quantitative Traits by Functional Regression Model
Version 1.12.0

A Tool for Epistasis Analysis Based on Functional Regression Model

Browse man pages Browse package API and functions Browse package files

AuthorFutao Zhang
Bioconductor views GeneticVariability Genetics NetworkInference Software
Date of publicationNone
MaintainerFutao Zhang <futoaz@gmail.com>
LicenseGPL-2
Version1.12.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("FRGEpistasis")

Man pages

fourierExpansion: Fourier Expansion of Genotype
fRGEpistasis: Genome Wide Epistasis Study by Functional Regress Model
FRGEpistasis-package: Package of Epistasis Detection by Functional Regression Model
frgEpistasisTest: Epistasis Test by Functional Regression Model
fRGInteraction: Interaction Test by Functional Regression Model
innerEpi: Epistasis Detection Inner one Chromosome
innerSnpListInteraction: Pairwise Interaction Test Inner The Same SNP List
logTransPheno: logarithmic transformation
outerEpi: Epistasis Detection Outer Chromosomes
outerSnpListInteraction: Pairwise Interaction Test Outer The SNP Lists
pCAInteraction: Epistasis Test by Principal Component Analysis
pCAPiontwiseEpistasis: Epistasis Test by PCA Method and Piontwise Method
pointwiseInteraction: Pointwise Interaction Test
rankTransPheno: Rank-Based Inverse Normal Transformation
reduceGeno: Reduction Dimension of Genotype
snpPairInteraction: SNP-SNP interaction

Functions

FRGEpistasis Man page
FRGEpistasis-package Man page
fRGEpistasis Man page Source code
fRGInteraction Man page Source code
fourierExpansion Man page Source code
frgEpistasisTest Man page Source code
innerEpi Man page Source code
innerSnpListInteraction Man page Source code
logTransPheno Man page Source code
outerEpi Man page Source code
outerSnpListInteraction Man page Source code
pCAInteraction Man page Source code
pCAPiontwiseEpistasis Man page Source code
pointwiseInteraction Man page Source code
rankTransPheno Man page Source code
reduceGeno Man page Source code
snpPairInteraction Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/fRGEpistasis.R
R/fRGInteraction.R
R/fourierExpansion.R
R/frgEpistasisTest.R
R/innerEpi.R
R/innerSnpListInteraction.R
R/logTransPheno.R
R/outerEpi.R
R/outerSnpListInteraction.R
R/pCAInteraction.R
R/pCAPiontwiseEpistasis.R
R/pointwiseInteraction.R
R/rankTransPheno.R
R/reduceGeno.R
R/snpPairInteraction.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/FRGEpistasis.R
inst/doc/FRGEpistasis.Rnw
inst/doc/FRGEpistasis.pdf
inst/extdata
inst/extdata/chr1.map
inst/extdata/chr2.map
inst/extdata/chr3.map
inst/extdata/chr4.map
inst/extdata/chr5.map
inst/extdata/gene.list.csv
inst/extdata/list_geno.txt
inst/extdata/list_map.txt
inst/extdata/phenotype.csv
inst/extdata/simGeno-chr1.raw
inst/extdata/simGeno-chr2.raw
inst/extdata/simGeno-chr3.raw
inst/extdata/simGeno-chr4.raw
inst/extdata/simGeno-chr5.raw
man
man/FRGEpistasis-package.Rd
man/fRGEpistasis.Rd
man/fRGInteraction.Rd
man/fourierExpansion.Rd
man/frgEpistasisTest.Rd
man/innerEpi.Rd
man/innerSnpListInteraction.Rd
man/logTransPheno.Rd
man/outerEpi.Rd
man/outerSnpListInteraction.Rd
man/pCAInteraction.Rd
man/pCAPiontwiseEpistasis.Rd
man/pointwiseInteraction.Rd
man/rankTransPheno.Rd
man/reduceGeno.Rd
man/snpPairInteraction.Rd
vignettes
vignettes/FRGEpistasis.Rnw
FRGEpistasis documentation built on May 20, 2017, 11:03 p.m.