FRGEpistasis: Epistasis Analysis for Quantitative Traits by Functional Regression Model

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A Tool for Epistasis Analysis Based on Functional Regression Model

Author
Futao Zhang
Date of publication
None
Maintainer
Futao Zhang <futoaz@gmail.com>
License
GPL-2
Version
1.10.0

View on Bioconductor

Man pages

fourierExpansion
Fourier Expansion of Genotype
fRGEpistasis
Genome Wide Epistasis Study by Functional Regress Model
FRGEpistasis-package
Package of Epistasis Detection by Functional Regression Model
frgEpistasisTest
Epistasis Test by Functional Regression Model
fRGInteraction
Interaction Test by Functional Regression Model
innerEpi
Epistasis Detection Inner one Chromosome
innerSnpListInteraction
Pairwise Interaction Test Inner The Same SNP List
logTransPheno
logarithmic transformation
outerEpi
Epistasis Detection Outer Chromosomes
outerSnpListInteraction
Pairwise Interaction Test Outer The SNP Lists
pCAInteraction
Epistasis Test by Principal Component Analysis
pCAPiontwiseEpistasis
Epistasis Test by PCA Method and Piontwise Method
pointwiseInteraction
Pointwise Interaction Test
rankTransPheno
Rank-Based Inverse Normal Transformation
reduceGeno
Reduction Dimension of Genotype
snpPairInteraction
SNP-SNP interaction

Files in this package

FRGEpistasis/DESCRIPTION
FRGEpistasis/NAMESPACE
FRGEpistasis/NEWS
FRGEpistasis/R
FRGEpistasis/R/fRGEpistasis.R
FRGEpistasis/R/fRGInteraction.R
FRGEpistasis/R/fourierExpansion.R
FRGEpistasis/R/frgEpistasisTest.R
FRGEpistasis/R/innerEpi.R
FRGEpistasis/R/innerSnpListInteraction.R
FRGEpistasis/R/logTransPheno.R
FRGEpistasis/R/outerEpi.R
FRGEpistasis/R/outerSnpListInteraction.R
FRGEpistasis/R/pCAInteraction.R
FRGEpistasis/R/pCAPiontwiseEpistasis.R
FRGEpistasis/R/pointwiseInteraction.R
FRGEpistasis/R/rankTransPheno.R
FRGEpistasis/R/reduceGeno.R
FRGEpistasis/R/snpPairInteraction.R
FRGEpistasis/build
FRGEpistasis/build/vignette.rds
FRGEpistasis/inst
FRGEpistasis/inst/CITATION
FRGEpistasis/inst/doc
FRGEpistasis/inst/doc/FRGEpistasis.R
FRGEpistasis/inst/doc/FRGEpistasis.Rnw
FRGEpistasis/inst/doc/FRGEpistasis.pdf
FRGEpistasis/inst/extdata
FRGEpistasis/inst/extdata/chr1.map
FRGEpistasis/inst/extdata/chr2.map
FRGEpistasis/inst/extdata/chr3.map
FRGEpistasis/inst/extdata/chr4.map
FRGEpistasis/inst/extdata/chr5.map
FRGEpistasis/inst/extdata/gene.list.csv
FRGEpistasis/inst/extdata/list_geno.txt
FRGEpistasis/inst/extdata/list_map.txt
FRGEpistasis/inst/extdata/phenotype.csv
FRGEpistasis/inst/extdata/simGeno-chr1.raw
FRGEpistasis/inst/extdata/simGeno-chr2.raw
FRGEpistasis/inst/extdata/simGeno-chr3.raw
FRGEpistasis/inst/extdata/simGeno-chr4.raw
FRGEpistasis/inst/extdata/simGeno-chr5.raw
FRGEpistasis/man
FRGEpistasis/man/FRGEpistasis-package.Rd
FRGEpistasis/man/fRGEpistasis.Rd
FRGEpistasis/man/fRGInteraction.Rd
FRGEpistasis/man/fourierExpansion.Rd
FRGEpistasis/man/frgEpistasisTest.Rd
FRGEpistasis/man/innerEpi.Rd
FRGEpistasis/man/innerSnpListInteraction.Rd
FRGEpistasis/man/logTransPheno.Rd
FRGEpistasis/man/outerEpi.Rd
FRGEpistasis/man/outerSnpListInteraction.Rd
FRGEpistasis/man/pCAInteraction.Rd
FRGEpistasis/man/pCAPiontwiseEpistasis.Rd
FRGEpistasis/man/pointwiseInteraction.Rd
FRGEpistasis/man/rankTransPheno.Rd
FRGEpistasis/man/reduceGeno.Rd
FRGEpistasis/man/snpPairInteraction.Rd
FRGEpistasis/vignettes
FRGEpistasis/vignettes/FRGEpistasis.Rnw