snpPairInteraction: SNP-SNP interaction

In FRGEpistasis: Epistasis Analysis for Quantitative Traits by Functional Regression Model

Description

Test the interaction of one SNP with another

Usage

snpPairInteraction(pheno, snp1, snp2)

Arguments

pheno	Vector of phenotype data which can be quantitative trait or binary trait.
snp1	Vector of genotype data of SNP1.
snp2	Vector of genotype data of SNP2.

Details

This function tests the interaction of one SNP with another.

Value

Return the p value for snp-snp interaction

Author(s)

Futao Zhang

Examples

pheno<- round(runif(1000,40,60))
snp1<-round(runif(1000,0,2))
snp2<-round(runif(1000,0,2))
pval=snpPairInteraction(pheno,snp1,snp2)

FRGEpistasis documentation built on Nov. 8, 2020, 5:51 p.m.