innerSnpListInteraction: Pairwise Interaction Test Inner The Same SNP List
In FRGEpistasis: Epistasis Analysis for Quantitative Traits by Functional Regression Model
Description
Usage
Arguments
Details
Value
Author(s)
Examples
View source: R/innerSnpListInteraction.R
Description
Test the SNP-SNP interaction.
And the SNPs are organized into one data structure.
Usage
1
innerSnpListInteraction(pheno, snpList)
Arguments
pheno
Vector of phenotype data.
snpList
Matrix of the genotypes of all the SNPs for testing the pairwise interactions.
Details
This function aims to test the pairwise interactions between the SNPs organized into the same data structure.
It takes phenotype and genotypes of the SNPs as the input.
And output all the p values for the interactions of SNP pairs.
Value
Return a frame contains names of all the SNPs pairs and p values for interactions of these pairs.
Author(s)
Futao Zhang
Examples
1
2
3
pheno<- round(runif(1000,40,60))
geno<- as.data.frame(matrix(round(runif(5000,0,2)),1000,5))
innerSnpListInteraction(pheno,geno)
FRGEpistasis documentation built on Nov. 8, 2020, 5:51 p.m.
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Description Usage Arguments Details Value Author(s) Examples
View source: R/innerSnpListInteraction.R
Description
Test the SNP-SNP interaction. And the SNPs are organized into one data structure.
Usage
1 | innerSnpListInteraction(pheno, snpList)
|
Arguments
pheno |
Vector of phenotype data. |
snpList |
Matrix of the genotypes of all the SNPs for testing the pairwise interactions. |
Details
This function aims to test the pairwise interactions between the SNPs organized into the same data structure. It takes phenotype and genotypes of the SNPs as the input. And output all the p values for the interactions of SNP pairs.
Value
Return a frame contains names of all the SNPs pairs and p values for interactions of these pairs.
Author(s)
Futao Zhang
Examples
1 2 3 | pheno<- round(runif(1000,40,60))
geno<- as.data.frame(matrix(round(runif(5000,0,2)),1000,5))
innerSnpListInteraction(pheno,geno)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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