apComplex: Estimate protein complex membership using AP-MS protein data

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

AuthorDenise Scholtens <dscholtens@northwestern.edu>
Date of publicationNone
MaintainerDenise Scholtens <dscholtens@northwestern.edu>
LicenseLGPL
Version2.40.0

View on Bioconductor

Functions

adjBinFUN Man page
apEX Man page
apEXG Man page
bhmaxSubgraph Man page
findComplexes Man page
fisherFUN Man page
gavin06FilteredEstimates Man page
gavinBP2006 Man page
gavinBP2006graph Man page
HMSPCI Man page
HMSPCIgraph Man page
Krogan Man page
krogan06FilteredEstimates Man page
kroganBPMat2006 Man page
LCjoin Man page
LCjoinadjBin Man page
LCjoinfisher Man page
LCjoinLchange Man page
MBMEcHMSPCI Man page
MBMEcKrogan Man page
MBMEcTAP Man page
mergeComplexes Man page
plotComplex Man page
SBMHcHMSPCI Man page
SBMHcTAP Man page
sortComplexes Man page
TAP Man page
TAPgraph Man page
UnRBBcHMSPCI Man page
UnRBBcTAP Man page
yNameTAP Man page
yTAP Man page

Files

apComplex/DESCRIPTION
apComplex/NAMESPACE
apComplex/R
apComplex/R/LCjoin.R apComplex/R/adjBinFUN.R apComplex/R/bhmaxSubgraph.R apComplex/R/findComplexes.R apComplex/R/fisherFUN.R apComplex/R/mergeComplexes.R apComplex/R/plotComplex.R apComplex/R/sortComplexes.R
apComplex/build
apComplex/build/vignette.rds
apComplex/data
apComplex/data/HMSPCI.rda
apComplex/data/HMSPCIgraph.rda
apComplex/data/Krogan.rda
apComplex/data/MBMEcHMSPCI.rda
apComplex/data/MBMEcKrogan.rda
apComplex/data/MBMEcTAP.rda
apComplex/data/SBMHcHMSPCI.rda
apComplex/data/SBMHcTAP.rda
apComplex/data/TAP.rda
apComplex/data/TAPgraph.rda
apComplex/data/UnRBBcHMSPCI.rda
apComplex/data/UnRBBcTAP.rda
apComplex/data/apEX.rda
apComplex/data/apEXG.rda
apComplex/data/gavin06FilteredEstimates.rda
apComplex/data/gavinBP2006.rda
apComplex/data/krogan06FilteredEstimates.rda
apComplex/data/kroganBPMat2006.rda
apComplex/data/yNameTAP.rda
apComplex/data/yTAP.rda
apComplex/inst
apComplex/inst/doc
apComplex/inst/doc/apComplex.R
apComplex/inst/doc/apComplex.Rnw
apComplex/inst/doc/apComplex.pdf
apComplex/man
apComplex/man/FilteredEstimates.Rd apComplex/man/HMSPCI.Rd apComplex/man/Krogan.Rd apComplex/man/LCjoin.Rd apComplex/man/MBMEcHMSPCI.Rd apComplex/man/MBMEcKrogan.Rd apComplex/man/MBMEcTAP.Rd apComplex/man/TAP.Rd apComplex/man/apEX.Rd apComplex/man/bhmaxSubgraph.Rd apComplex/man/findComplexes.Rd apComplex/man/gavinBP2006.Rd apComplex/man/kroganBPMat2006.Rd apComplex/man/mergeComplexes.Rd apComplex/man/plotComplex.Rd apComplex/man/sortComplexes.Rd apComplex/man/yNameTAP.Rd apComplex/man/yTAP.Rd
apComplex/vignettes
apComplex/vignettes/apComplex.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.