apComplex: Estimate protein complex membership using AP-MS protein data

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("apComplex")
AuthorDenise Scholtens <dscholtens@northwestern.edu>
Bioconductor views GraphAndNetwork MassSpectrometry NetworkInference
Date of publicationNone
MaintainerDenise Scholtens <dscholtens@northwestern.edu>
LicenseLGPL
Version2.40.0

View on Bioconductor

Functions

adjBinFUN Man page
apEX Man page
apEXG Man page
bhmaxSubgraph Man page
findComplexes Man page
fisherFUN Man page
gavin06FilteredEstimates Man page
gavinBP2006 Man page
gavinBP2006graph Man page
HMSPCI Man page
HMSPCIgraph Man page
Krogan Man page
krogan06FilteredEstimates Man page
kroganBPMat2006 Man page
LCjoin Man page
LCjoinadjBin Man page
LCjoinfisher Man page
LCjoinLchange Man page
MBMEcHMSPCI Man page
MBMEcKrogan Man page
MBMEcTAP Man page
mergeComplexes Man page
plotComplex Man page
SBMHcHMSPCI Man page
SBMHcTAP Man page
sortComplexes Man page
TAP Man page
TAPgraph Man page
UnRBBcHMSPCI Man page
UnRBBcTAP Man page
yNameTAP Man page
yTAP Man page

Files

DESCRIPTION
NAMESPACE
R
R/LCjoin.R R/adjBinFUN.R R/bhmaxSubgraph.R R/findComplexes.R R/fisherFUN.R R/mergeComplexes.R R/plotComplex.R R/sortComplexes.R
build
build/vignette.rds
data
data/HMSPCI.rda
data/HMSPCIgraph.rda
data/Krogan.rda
data/MBMEcHMSPCI.rda
data/MBMEcKrogan.rda
data/MBMEcTAP.rda
data/SBMHcHMSPCI.rda
data/SBMHcTAP.rda
data/TAP.rda
data/TAPgraph.rda
data/UnRBBcHMSPCI.rda
data/UnRBBcTAP.rda
data/apEX.rda
data/apEXG.rda
data/gavin06FilteredEstimates.rda
data/gavinBP2006.rda
data/krogan06FilteredEstimates.rda
data/kroganBPMat2006.rda
data/yNameTAP.rda
data/yTAP.rda
inst
inst/doc
inst/doc/apComplex.R
inst/doc/apComplex.Rnw
inst/doc/apComplex.pdf
man
man/FilteredEstimates.Rd man/HMSPCI.Rd man/Krogan.Rd man/LCjoin.Rd man/MBMEcHMSPCI.Rd man/MBMEcKrogan.Rd man/MBMEcTAP.Rd man/TAP.Rd man/apEX.Rd man/bhmaxSubgraph.Rd man/findComplexes.Rd man/gavinBP2006.Rd man/kroganBPMat2006.Rd man/mergeComplexes.Rd man/plotComplex.Rd man/sortComplexes.Rd man/yNameTAP.Rd man/yTAP.Rd
vignettes
vignettes/apComplex.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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