gavinBP2006: Tandem Affinity Purification (TAP) Data from Gavin et al....

In apComplex: Estimate protein complex membership using AP-MS protein data

Description

TAP data published by Gavin, et al. (2006).

Usage

data(gavinBP2006)

Details

gavinBP2006 is a matrix of the TAP data published by Gavin, et al. (2006). The 1752 rows correspond to bait proteins and the 2551 columns correspond to proteins found as hits in the TAP experiment and are named accordingly. The first 1752 column names are the same as the 1752 row names; bait proteins can also be found as hits by other baits, hence their inclusion as columns in gavinBP2006. An entry of "1" in the ith row and jth column of gavinBP2006 indicates that bait protein i found protein j as a hit. All other entries are "0". There are a total of 19105 "1" entries in the matrix, corresponding to the 19105 comemberships detected in the experiment.

These data are available in the IntAct repository under Gavin et al - 2006.

Source

Gavin, et al. Functional Organization of the Yeast Proteome by Systematic Analysis of the Yeast Complex. Nature 440, 631-636 (2002).

See Also

yTAP,MBMEcTAP,SBMHcTAP,UnRBBcTAP,HMSPCI

Examples

data(gavinBP2006)
which(gavinBP2006[1,]==1)

apComplex documentation built on Nov. 8, 2020, 7:43 p.m.