TAP data published by Gavin, et al. (2002).
TAP is a matrix of the TAP data published by Gavin, et al. (2002). The 455 rows correspond to bait proteins and the 1364 columns correspond to
proteins found as hits in the TAP experiment and are named accordingly.
The first 455 column names are the same as the 455 row names; bait proteins
can also be found as hits by other baits, hence their inclusion as columns in
TAP. An entry of "1" in the ith row and jth column of
indicates that bait protein i found protein j as a hit. All other entries are
"0". There are a total of 3420 "1" entries in the matrix, corresponding to
the 3420 comemberships detected in the experiment.
TAPgraph is a
graphNEL object in which 1364 nodes
represent proteins and 3420 directed edges represent comemberships detected in
the purification. Each directed edge originates at the bait and ends at
the hit. Each edge in
TAPgraph corresponds to an entry of "1" in
These data are available in Supplementary Table S1 of Gavin et al. at http://www.nature.com.
Gavin, et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147 (2002).
Scholtens D and Gentleman R. Making sense of high-throughput protein-protein interaction data. Statistical Applications in Genetics and Molecular Biology 3, Article 39 (2004).
Scholtens D, Vidal M, and Gentleman R. Local modeling of global interactome networks. Bioinformatics 21, 3548-3557 (2005).
1 2 3 4 5
Loading required package: graph Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: RBGL Rpb2 Spt5 926 1049 $Abd1  "Rpb2" "Spt5"
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.