A matrix and corresponding graph of AP-MS purifications from a small hypothetical experiment.
apEX is a matrix of hypothetical AP-MS data. The 4 rows correspond to bait proteins and the 8 columns correspond to
proteins found as hits in the hypothetical experiment and are named accordingly.
The first 4 column names are the same as the 4 row names; bait proteins
can also be found as hits by other baits, hence their inclusion as columns in
apEX. An entry of "1" in the ith row and jth column of
indicates that bait protein i found protein j as a hit. All other entries are
"0". There are a total of 9 "1" entries in the matrix, corresponding to 9 comemberships detected in the experiment.
apEXG is a
graphNEL object in which 8 nodes
represent proteins and 9 directed edges represent comemberships detected in
the purification. Each directed edge originates at the bait and ends at
the hit. Each edge in
apEXG corresponds to an entry of "1" in
These data are used in the
1 2 3 4 5
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