kroganBPMat2006: Tandem Affinity Purification (TAP) Data from Krogan et al....

In apComplex: Estimate protein complex membership using AP-MS protein data

Description

TAP data published by Krogan, et al. (2006).

Usage

data(kroganBPMat2006)

Details

kroganBPMat2006 is a matrix of the TAP data published by Krogan, et al. (2006). The 2264 rows correspond to bait proteins and the 5361 columns correspond to proteins found as hits in the TAP experiment and are named accordingly. The first 2264 column names are the same as the 2264 row names; bait proteins can also be found as hits by other baits, hence their inclusion as columns in kroganBPMat2006. An entry of "1" in the ith row and jth column of kroganBPMat2006 indicates that bait protein i found protein j as a hit. All other entries are "0". There are a total of "1" entries in the matrix, corresponding to the 63360 comemberships detected in the experiment.

These data were obtained from the Primary Source -

Source

N Krogan et al. Global Landscape of Protein Complexes in the Yeast, S. Cerevisiae. Nature, 440:667-643, 2006.

See Also

yTAP,MBMEcTAP,SBMHcTAP,UnRBBcTAP,HMSPCI

Examples

data(kroganBPMat2006)
which(kroganBPMat2006[1,]==1)

apComplex documentation built on Nov. 8, 2020, 7:43 p.m.