SPEM: S-system parameter estimation method

This package can optimize the parameter in S-system models given time series data

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SPEM")
AuthorXinyi YANG Developer, Jennifer E. DENT Developer and Christine NARDINI Supervisor
Bioconductor views Network NetworkInference Software
Date of publicationNone
MaintainerXinyi YANG <yangxinyi@picb.ac.cn>
LicenseGPL-2
Version1.14.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/SPEM.R R/initial_beta_guess.R R/initial_h_guess.R R/opt_parameter.R R/pre_prepare.R R/row_optimize.R R/s_diff.R R/ssystem_set.R
build
build/vignette.rds
data
data/sos.rda
inst
inst/NEWS
inst/doc
inst/doc/SPEM-package.R
inst/doc/SPEM-package.Rnw
inst/doc/SPEM-package.pdf
man
man/SPEM-package.Rd man/SPEM.Rd man/row_optimize.Rd man/s_diff.Rd man/sos.Rd
vignettes
vignettes/Addendum.bib
vignettes/Flowchartmain.pdf
vignettes/SPEM-package.Rnw
vignettes/S_system.pdf
vignettes/sospathway.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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