SPEM: S-system parameter estimation method

This package can optimize the parameter in S-system models given time series data

Author
Xinyi YANG Developer, Jennifer E. DENT Developer and Christine NARDINI Supervisor
Date of publication
None
Maintainer
Xinyi YANG <yangxinyi@picb.ac.cn>
License
GPL-2
Version
1.14.0

View on Bioconductor

Man pages

row_optimize
Calculate parameters for one row
s_diff
Calculate slopes from time points and time series matrix.
sos
SOS pathway time series data
SPEM
S-system parameter estimation method
SPEM-package
S-system parameter estimation method package

Files in this package

SPEM/DESCRIPTION
SPEM/NAMESPACE
SPEM/R
SPEM/R/SPEM.R
SPEM/R/initial_beta_guess.R
SPEM/R/initial_h_guess.R
SPEM/R/opt_parameter.R
SPEM/R/pre_prepare.R
SPEM/R/row_optimize.R
SPEM/R/s_diff.R
SPEM/R/ssystem_set.R
SPEM/build
SPEM/build/vignette.rds
SPEM/data
SPEM/data/sos.rda
SPEM/inst
SPEM/inst/NEWS
SPEM/inst/doc
SPEM/inst/doc/SPEM-package.R
SPEM/inst/doc/SPEM-package.Rnw
SPEM/inst/doc/SPEM-package.pdf
SPEM/man
SPEM/man/SPEM-package.Rd
SPEM/man/SPEM.Rd
SPEM/man/row_optimize.Rd
SPEM/man/s_diff.Rd
SPEM/man/sos.Rd
SPEM/vignettes
SPEM/vignettes/Addendum.bib
SPEM/vignettes/Flowchartmain.pdf
SPEM/vignettes/SPEM-package.Rnw
SPEM/vignettes/S_system.pdf
SPEM/vignettes/sospathway.pdf