KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data [option]

See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

AuthorShana White
Date of publicationNone
MaintainerShana White <vandersm@mail.uc.edu>
LicenseGPL-3
Version1.0.0

View on Bioconductor

Files

KEGGlincs/DESCRIPTION
KEGGlincs/NAMESPACE
KEGGlincs/NEWS
KEGGlincs/R
KEGGlincs/R/KEGG_lincs.R KEGGlincs/R/KEGGlincs.R KEGGlincs/R/add_edge_data.R KEGGlincs/R/cyto_vis.R KEGGlincs/R/edge_mapping_info.R KEGGlincs/R/expand_KEGG_edges.R KEGGlincs/R/expand_KEGG_mappings.R KEGGlincs/R/from_cyREST.R KEGGlincs/R/generate_mappings.R KEGGlincs/R/get_KGML.R KEGGlincs/R/get_fisher_info.R KEGGlincs/R/get_graph_object.R KEGGlincs/R/node_mapping_info.R KEGGlincs/R/overlap_info.R KEGGlincs/R/path_genes_by_cell_type.R KEGGlincs/R/refine_mappings.R
KEGGlincs/build
KEGGlincs/build/vignette.rds
KEGGlincs/inst
KEGGlincs/inst/doc
KEGGlincs/inst/doc/Cytoscape_formatting.R
KEGGlincs/inst/doc/Cytoscape_formatting.Rmd
KEGGlincs/inst/doc/Cytoscape_formatting.html
KEGGlincs/inst/doc/Example-workflow.R
KEGGlincs/inst/doc/Example-workflow.Rmd
KEGGlincs/inst/doc/Example-workflow.html
KEGGlincs/man
KEGGlincs/man/KEGG_lincs.Rd KEGGlincs/man/KEGGlincs.Rd KEGGlincs/man/add_edge_data.Rd KEGGlincs/man/cyto_vis.Rd KEGGlincs/man/edge_mapping_info.Rd KEGGlincs/man/expand_KEGG_edges.Rd KEGGlincs/man/expand_KEGG_mappings.Rd KEGGlincs/man/generate_mappings.Rd KEGGlincs/man/get_KGML.Rd KEGGlincs/man/get_fisher_info.Rd KEGGlincs/man/get_graph_object.Rd KEGGlincs/man/node_mapping_info.Rd KEGGlincs/man/overlap_info.Rd KEGGlincs/man/path_genes_by_cell_type.Rd KEGGlincs/man/refine_mappings.Rd KEGGlincs/man/toCytoscape.Rd
KEGGlincs/vignettes
KEGGlincs/vignettes/Cytoscape_formatting.Rmd
KEGGlincs/vignettes/Example-workflow.Rmd
KEGGlincs/vignettes/image_files
KEGGlincs/vignettes/image_files/KEGGlincs_overview.jpeg
KEGGlincs/vignettes/image_files/color_1.svg
KEGGlincs/vignettes/image_files/color_2.svg
KEGGlincs/vignettes/image_files/find_box.jpg
KEGGlincs/vignettes/image_files/fit_content.jpg
KEGGlincs/vignettes/image_files/foxo_ID_conversion.jpeg
KEGGlincs/vignettes/image_files/foxo_no_IDconversion.jpeg
KEGGlincs/vignettes/image_files/hsa04068.png
KEGGlincs/vignettes/image_files/p53_HA1E.jpeg
KEGGlincs/vignettes/image_files/p53_HA1E_vignette.jpeg
KEGGlincs/vignettes/image_files/p53_PC3.jpeg
KEGGlincs/vignettes/image_files/p53_PC3_vignette.jpeg
KEGGlincs/vignettes/image_files/p53_coverage_graph.png
KEGGlincs/vignettes/image_files/p53_default.jpeg
KEGGlincs/vignettes/image_files/random_KO_info.jpeg
KEGGlincs/vignettes/image_files/select_style_tab.jpg

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