toCytoscape: cyREST utility functions
In KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data
Description
Usage
Arguments
Value
Description
A subset of the R utility functions available from/defined
by cyREST. The function mapAttributes is called from within toCytoscape
which, in turn, is called from within cyto_vis.
Usage
1
2
3
toCytoscape(igraphobj)
mapAttributes(attr.names, all.attr, i)
Arguments
igraphobj
A graph object compatible for use with the package igraph
attr.names
Attribute names of an igraph object
all.attr
The attribute value if an igraph object
i
The index for a given igraph object
Value
A JSON object to be sent to Cytoscape
KEGGlincs documentation built on Nov. 8, 2020, 5:47 p.m.
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Description Usage Arguments Value
Description
A subset of the R utility functions available from/defined by cyREST. The function mapAttributes is called from within toCytoscape which, in turn, is called from within cyto_vis.
Usage
1 2 3 | toCytoscape(igraphobj)
mapAttributes(attr.names, all.attr, i)
|
Arguments
igraphobj |
A graph object compatible for use with the package igraph |
attr.names |
Attribute names of an igraph object |
all.attr |
The attribute value if an igraph object |
i |
The index for a given igraph object |
Value
A JSON object to be sent to Cytoscape
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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