cbg-ethz/nempi: Inferring unobserved perturbations from gene expression data
Takes as input an incomplete perturbation profile and differential gene expression in log odds and infers unobserved perturbations and augments observed ones. The inference is done by iteratively inferring a network from the perturbations and inferring perturbations from the network. The network inference is done by Nested Effects Models.
Getting started
Browse package contents
Package details |
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| Bioconductor views | ATACSeq CRISPR Classification DNASeq DifferentialExpression DifferentialMethylation GeneExpression GeneSignaling Network NetworkInference NeuralNetwork Pathways PooledScreens RNASeq SingleCell Software SystemsBiology |
| Maintainer | |
| License | GPL-3 |
| Version | 1.11.0 |
| URL | https://github.com/cbg-ethz/nempi/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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