PANR: Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

AuthorXin Wang <xin_wang@hms.harvard.edu>
Date of publicationNone
MaintainerXin Wang <xin_wang@hms.harvard.edu>
LicenseArtistic-2.0
Version1.20.0

View on Bioconductor

Files in this package

PANR/DESCRIPTION
PANR/NAMESPACE
PANR/R
PANR/R/AllClasses.R PANR/R/AllGenerics.R PANR/R/BetaMixture-methods.R PANR/R/PAN-methods.R PANR/R/assoScore.R PANR/R/classUnions.R PANR/R/panGraphics.R
PANR/build
PANR/build/vignette.rds
PANR/data
PANR/data/Bakal2007.RData
PANR/data/Bakal2007Cluster.RData
PANR/data/bm.RData
PANR/data/datalist
PANR/inst
PANR/inst/CHANGES
PANR/inst/NEWS
PANR/inst/doc
PANR/inst/doc/PANR-Vignette.R
PANR/inst/doc/PANR-Vignette.Rnw
PANR/inst/doc/PANR-Vignette.pdf
PANR/man
PANR/man/BetaMixture-class.Rd PANR/man/PAN-class.Rd PANR/man/SNR2p.Rd PANR/man/assoScore.Rd PANR/man/buildPAN.Rd PANR/man/cosineSim.Rd PANR/man/data-Bakal2007.Rd PANR/man/edgeWeight.Rd PANR/man/exportPAN.Rd PANR/man/fitBM.Rd PANR/man/fitNULL.Rd PANR/man/infer.Rd PANR/man/p2SNR.Rd PANR/man/permNULL.Rd PANR/man/pvclustModule.Rd PANR/man/sigModules.Rd PANR/man/summarize.Rd PANR/man/view.Rd PANR/man/viewLegend.Rd PANR/man/viewNestedModules.Rd PANR/man/viewPAN.Rd
PANR/vignettes
PANR/vignettes/PANR-Vignette.Rnw
PANR/vignettes/fullPAN.pdf
PANR/vignettes/overview.png
PANR/vignettes/pvmodule.pdf
PANR/vignettes/sigmod.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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