Summarize the object of S4 class 'BetaMixture' or 'PAN'

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Description

The function helps print a summary of an object of S4 class BetaMixture or PAN.

Usage

1
summarize(object, what='ALL', ...) 

Arguments

object

an object of S4 class BetaMixture or PAN.

what

a character value specifying what to print (see details).

...

not in use, only for further extension.

Details

This function print a summary of an object of BetaMixture or PAN. The function is also called by S4 method show, which prints only a short message about the input parameters and data.

For an object of class BetaMixture:

If what='input', the function prints to screen a summary of input parameters; If what='fitNULL', the function prints to screen a summary of fitting results for the NULL distribution. If what='fitBM', the function prints to screen a summary of fitting results for the beta-mixture model. If what='ALL', all above messages will be printed.

For an object of class PAN:

If what='input', the function prints to screen a summary of input object(s) of class BetaMixture; If what='graph', the function prints to screen a summary of inferred posterior association network; If what='module', the function prints to screen a summary of functional gene modules; If what='ALL', all above messages will be printed.

Author(s)

Xin Wang xw264@cam.ac.uk

References

Xin Wang, Mauro Castro, Klaas W. Mulder and Florian Markowetz, Posterior association networks and enriched functional gene modules inferred from rich phenotypic perturbation screens, in preparation.

Examples

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data(bm)
summarize(bm1, what='ALL')