bozdaglab/PhenoGeneRanker: PhenoGeneRanker: A gene and phenotype prioritization tool

This package is a gene/phenotype prioritization tool that utilizes multiplex heterogeneous gene phenotype network. PhenoGeneRanker allows multi-layer gene and phenotype networks. It also calculates empirical p-values of gene/phenotype ranking using random stratified sampling of genes/phenotypes based on their connectivity degree in the network.

Getting started

Package details

Bioconductor views BiomedicalInformatics GenePrediction GraphAndNetwork Network NetworkInference Pathways Software SystemsBiology
LicenseCreative Commons Attribution 4.0 International License
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
bozdaglab/PhenoGeneRanker documentation built on March 11, 2021, 5:37 a.m.